RNA id: TU148440


Basic Information

Item Value
RNA id TU148440
length 314
lncRNA type intronic
GC content 0.44
exon number 2
gene id G128719
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 28633596 ~ 28634986 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggttaactgcctcattcaggggcagaacgacagattttcacctcgtcaggtttcattatttatttgaggctaaattgattttattgatgtattatattaagttaaaataagtgttcattcagtattgttgtaattgtcattattacaaataaataaaataagaaaatcggacgattaatcggtatcgtcttttttggtcctccaataatcggtatcggcgttgaaaaatcataatcggtcgacctctaattaccTGTACATTACACTGTTGACGTTACCTTGTCTGCTTTGCTGTTTTGTTAGACTCTTCTTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU148400 lncRNA upstream 32987 28568316 ~ 28600609 (+) True G128679
TU148264 lncRNA upstream 250672 28311826 ~ 28382924 (+) True G128549
TU148276 lncRNA upstream 253494 28379782 ~ 28380102 (+) True G128561
TU148261 lncRNA upstream 328599 28304484 ~ 28304997 (+) True G128546
TU148246 lncRNA upstream 368142 28264194 ~ 28265454 (+) True G128531
TU148361 lncRNA downstream 53267 28688253 ~ 28689570 (+) True G128640
TU148462 lncRNA downstream 55109 28690095 ~ 28690399 (+) True G128741
TU148466 lncRNA downstream 57966 28692952 ~ 28693246 (+) True G128745
TU148467 lncRNA downstream 58360 28693346 ~ 28693605 (+) True G128746
TU148468 lncRNA downstream 58706 28693692 ~ 28693967 (+) True G128747
XM_021557018.2 mRNA upstream 163848 28400163 ~ 28469748 (+) True si:ch73-22o12.1
XM_036944382.1 mRNA upstream 182836 28399615 ~ 28450760 (+) False si:ch73-22o12.1
XM_021557008.2 mRNA upstream 182836 28400158 ~ 28450760 (+) False si:ch73-22o12.1
XM_036944357.1 mRNA upstream 277354 28338839 ~ 28356242 (+) False vars1
XM_036944448.1 mRNA downstream 84950 28719936 ~ 28780547 (+) False LOC110485894
XM_036944439.1 mRNA downstream 85789 28720775 ~ 28780547 (+) False LOC110485894
XM_036944441.1 mRNA downstream 86196 28721182 ~ 28780547 (+) False LOC110485894
XM_036944436.1 mRNA downstream 86197 28721183 ~ 28780547 (+) False LOC110485894
XM_036944443.1 mRNA downstream 86197 28721183 ~ 28780547 (+) False LOC110485894
TU148197 other upstream 85681 28250842 ~ 28547915 (+) True G128490
TU148132 other upstream 544151 28088647 ~ 28089445 (+) True G128436
TU147867 other upstream 916433 27716482 ~ 27717163 (+) True G128185
TU147350 other upstream 1330041 27302078 ~ 27303555 (+) True LOC110485466
TU147273 other upstream 1443003 27189991 ~ 27190593 (+) True G127644
TU148570 other downstream 297070 28932056 ~ 28944390 (+) True LOC110485990
TU148590 other downstream 304913 28939899 ~ 28981288 (+) True G128853
TU148818 other downstream 842631 29477617 ~ 29478130 (+) True LOC110534631
TU148912 other downstream 849647 29484633 ~ 29485130 (+) True G129155
TU150186 other downstream 965040 29600026 ~ 29641096 (+) True G130308

Expression Profile