RNA id: TU148361


Basic Information

Item Value
RNA id TU148361
length 1318
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G128640
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 28688253 ~ 28689570 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tagtaattgtatgtgtggggtacagagatgaggtagtcattcaaaatcatgttaaacactatcatTGCACATAGAATGAGTCTATGCAACATatgatgtgacttgttaagcagatttttactcctgaacatatttaggcttgccataacaaaggggttgaaaactttatgactcaatacatttcagcttttcattttttattaatttgtaaacatttctaaaacagaattccactttgacattatggggtattgtgtgtgtgggccagtaacacaacatctcaattgaatcTATATTAAATTCAGGCTGAAAAAGCAAAGTGGTGTGAAGGCACTGCAAGTGGTGTAGACTTACCTAATTATAACCTTATAAACATTTATATCTGAGATCAACATGGTTGATAATGTTGTTGTTGACAGTTTTTGAAGGAAACGGAATAGGAGGTGTGAATGGTGTCCACAATAACTAGATGTTTCTCATCAGAATCAGATCTCTGTCGATGATAAACAAGATGTGAGAAACCAGAGTGAGCGTCTGTGATCTTATCTCCAAGGTGCAGGCGTTGTGCAGTCAATTTGCACCAAAGATTATTCATTGGAAATGTGTTTGAAAAACTACTGAACTGTTCTCCCCCCCCACATCTATTTCAACAGGCACTTCAAACCAAGGTCATTCATGATTTTTTAGAATGATTACCAATTCATGTAGGTGTGATGTACATTTCCCTTTCAGAGCACACAGACTTAGCTACGATGTTTGATGCCGGAAAAGATCATAGATGTTAACCCCATCAGCAAATGTCAATGAACTATTAATGTCCAAAATCATCTGCTTAACCTTATTGATTGCTCAAATTATGAATTGGTTGCTCAAATTATGAATTGATCTTGAATTATATGTTTTGTTCAGTTAATCATGTTGAACTCAATATTCTTGTAGCAATGTATCAAGTGTGGATGTTTTTTAAGTTCTACATTTTGAGGGTTGTTTAGGGACAGTTCCTGTGTTTGTATTTAACCGAGGTGTGGCGAATGTTCTTCCCTTCTGCCTTATCAGATGTGAAATCAACAGAGCTGTTCTTAGAGTGAAAGTAGCAGCTGCTTTGCATGCAACCACAGCGACTGAGGCACCTCAGCAAGCTCAGGTGTTCTTCAGAGATTTTATCTCAATAGGGAGACCAAATCCTGTTTTcaatgtttacacacacacactcaaacgcaCACACTGGCTTCCCCACTAGAGGGCATACTGAGCTTGTGTTTAATAAGTGAATCATGGCAATTCTGAACCTTGTGTCAGTCAATTACAGCAAGACGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU148373 lncRNA upstream 44227 28599287 ~ 28644026 (+) True G128652
TU148440 lncRNA upstream 53267 28633596 ~ 28634986 (+) True G128719
TU148400 lncRNA upstream 87644 28568316 ~ 28600609 (+) True G128679
TU148264 lncRNA upstream 305329 28311826 ~ 28382924 (+) True G128549
TU148276 lncRNA upstream 308151 28379782 ~ 28380102 (+) True G128561
TU148462 lncRNA downstream 525 28690095 ~ 28690399 (+) True G128741
TU148466 lncRNA downstream 3382 28692952 ~ 28693246 (+) True G128745
TU148467 lncRNA downstream 3776 28693346 ~ 28693605 (+) True G128746
TU148468 lncRNA downstream 4122 28693692 ~ 28693967 (+) True G128747
TU148482 lncRNA downstream 23422 28712992 ~ 28718735 (+) True G128760
XM_021557031.2 mRNA upstream 923 28537535 ~ 28687330 (+) False LOC110485836
XM_021557045.2 mRNA upstream 923 28537535 ~ 28687330 (+) False LOC110485836
XM_021557037.2 mRNA upstream 923 28583743 ~ 28687330 (+) False LOC110485836
XM_021557053.2 mRNA upstream 923 28602655 ~ 28687330 (+) True LOC110485836
XR_002468004.2 mRNA upstream 6646 28537533 ~ 28681607 (+) False LOC110485836
XM_036944448.1 mRNA downstream 30366 28719936 ~ 28780547 (+) False LOC110485894
XM_036944439.1 mRNA downstream 31205 28720775 ~ 28780547 (+) False LOC110485894
XM_036944441.1 mRNA downstream 31612 28721182 ~ 28780547 (+) False LOC110485894
XM_036944436.1 mRNA downstream 31613 28721183 ~ 28780547 (+) False LOC110485894
XM_036944443.1 mRNA downstream 31613 28721183 ~ 28780547 (+) False LOC110485894
TU148197 other upstream 140338 28250842 ~ 28547915 (+) True G128490
TU148132 other upstream 598808 28088647 ~ 28089445 (+) True G128436
TU147867 other upstream 971090 27716482 ~ 27717163 (+) True G128185
TU147350 other upstream 1384698 27302078 ~ 27303555 (+) True LOC110485466
TU147273 other upstream 1497660 27189991 ~ 27190593 (+) True G127644
TU148570 other downstream 242486 28932056 ~ 28944390 (+) True LOC110485990
TU148590 other downstream 250329 28939899 ~ 28981288 (+) True G128853
TU148818 other downstream 788047 29477617 ~ 29478130 (+) True LOC110534631
TU148912 other downstream 795063 29484633 ~ 29485130 (+) True G129155
TU150186 other downstream 910456 29600026 ~ 29641096 (+) True G130308

Expression Profile