RNA id: TU148539


Basic Information

Item Value
RNA id TU148539
length 233
lncRNA type intronic
GC content 0.36
exon number 1
gene id G128813
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 28851577 ~ 28851809 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cttgttgttgattcttcacaaaaaaatacagttttatatctttatgtttgaagcctgaaatgtggcaaaaagtcgcaaagttcaagggggccgaatactttcgcaaggcactgtatcttcatTACAGCAGATGGGTAAAATGAGAGTACTGTATTTCTGGGAATGTTTAGGCCTAAACACTGAAATATAGGCTACCCAATATGTACGCACAACATAAAGGGTAACAATTATAT

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU148354 lncRNA upstream 77995 28768219 ~ 28773582 (+) True G128638
TU148482 lncRNA upstream 132842 28712992 ~ 28718735 (+) True G128760
TU148468 lncRNA upstream 157610 28693692 ~ 28693967 (+) True G128747
TU148467 lncRNA upstream 157972 28693346 ~ 28693605 (+) True G128746
TU148466 lncRNA upstream 158331 28692952 ~ 28693246 (+) True G128745
TU148507 lncRNA downstream 12487 28864296 ~ 28865175 (+) True LOC110485935
TU148849 lncRNA downstream 503663 29355472 ~ 29356526 (+) True G129093
TU148855 lncRNA downstream 515165 29366974 ~ 29367331 (+) True G129099
TU148906 lncRNA downstream 621473 29473282 ~ 29473490 (+) True G129149
TU148908 lncRNA downstream 622444 29474253 ~ 29474520 (+) True G129151
XM_036944448.1 mRNA upstream 71030 28719936 ~ 28780547 (+) False LOC110485894
XM_036944439.1 mRNA upstream 71030 28720775 ~ 28780547 (+) False LOC110485894
XM_036944441.1 mRNA upstream 71030 28721182 ~ 28780547 (+) False LOC110485894
XM_036944436.1 mRNA upstream 71030 28721183 ~ 28780547 (+) False LOC110485894
XM_036944443.1 mRNA upstream 71030 28721183 ~ 28780547 (+) False LOC110485894
XM_021557241.2 mRNA downstream 15493 28867302 ~ 28905546 (+) True LOC110485968
XM_021557254.2 mRNA downstream 63012 28914821 ~ 28931101 (+) False LOC110485980
XM_036944479.1 mRNA downstream 63105 28914914 ~ 28931101 (+) True LOC110485980
XM_021557264.2 mRNA downstream 80179 28931988 ~ 28951235 (+) False LOC110485990
trnat-ugu-29 mRNA downstream 169610 29021419 ~ 29021491 (+) True trnat-ugu-29
TU148197 other upstream 303662 28250842 ~ 28547915 (+) True G128490
TU148132 other upstream 762132 28088647 ~ 28089445 (+) True G128436
TU147867 other upstream 1134414 27716482 ~ 27717163 (+) True G128185
TU147350 other upstream 1548022 27302078 ~ 27303555 (+) True LOC110485466
TU147273 other upstream 1660984 27189991 ~ 27190593 (+) True G127644
TU148570 other downstream 80247 28932056 ~ 28944390 (+) True LOC110485990
TU148590 other downstream 88090 28939899 ~ 28981288 (+) True G128853
TU148818 other downstream 625808 29477617 ~ 29478130 (+) True LOC110534631
TU148912 other downstream 632824 29484633 ~ 29485130 (+) True G129155
TU150186 other downstream 748217 29600026 ~ 29641096 (+) True G130308

Expression Profile