RNA id: TCONS_00030001


Basic Information

Item Value
RNA id TCONS_00030001
length 1403
lncRNA type inter_gene
GC content 0.39
exon number 3
gene id XLOC_014191
representative False

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 35863209 ~ 36018954 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TAAGTTGTCTGCCAACTGCCAATAAAATTCAcgagaagaggaagaagaaaaagacTGTTTGGTAGTTGTATTTGCATGGCTTGACCATGTGCTCAGTGCAGCTTTTGACACCAACCCTGTTATGAGAAACATCTTTTGTTCTTCAGCTTAATAGTCTGACAGAGAGAGACGGAGCACCAAAAGCCCTCCAGGAGTGCATCTTCAACTTCACGCCCCCTCAGGATGGGCGGGAGCAAGGGGACCATCTCTATTCCAGGTTGTACCCGCTGAATCATTCATGAAAAACTCAAGTCACAGCTCCTATCTGGAACCATAGGCAACCCAGAGAAGGACTTCCATTCAAGTGTGTATATCCTTGATAAATACAGTGTCTGTTATCAATATAAACCTTTAGTGGGATTGATGCTCTGTCGCTAACAGAGAGGAGTGTGTACCGATGGGGAAAATCAGCTCCAATAAGAACAGATTTAAATGGTTGCCGTGGCCTGCGATGGGCTCAGCAGATGACTCTTCAGTACGGCAAATCAGCCGGCGACCTTGGCTATGATTGTTCATCACTCTTTCTCTTCACACCCACTTCCTCATCCCTGAATAGACCACTGATCCCTATGGAGTGTTTATTTCTGTACATGTCGTCTTATGTTCTTGCTTGTGTTCTTGGGTGGTGTTTTGAAATTCATATGGATATGCGAgagatttgttttatattatttatttcggGCCAGGATTGCCATGCCAAAATGAACTGGCAAAGATAAAAACTTTTGCAGCAGACTTCTTTAAAGTCTTGAGATTCAGAGTTATATATTATGGaatacaaacctttttttatgatGCAGAATTTTAGAATTGATACAtaatacaaatttatatatatatatatatttataatatatgtataaaatggaCTCATCAAACACATAATTGACTGTGTTGTACATGTAACACCCttatcatacagttgaagtcagaattattagccccccctaaattattagctagtttttttcttttcttccaatttctatttaatgtaaagattttttttcaacacatttctaaacataatagtttgaataactgatttctaattactgttttattttatctttcactTCAGCACTTTAGACACCAGAACTGTAAACTCTTCAATTTCACTTGATGTAAACCgtttgtcacacaaccagcgatcgctttccagagatcgctggttctcacacgaactctcaggactacacttccgcatttcccaggactacacattcatacatggaCTTCTCCTAGACACGCACACCTGCTCATTCATCTACCCTGATTACAATCACCAGCTGCACCTTGTCAGATACTGATACAAACCATTTATAAGCCACTCTTTCacccttccagtttgccgagtcttgttt

Function

GO:

id name namespace
GO:0008263 pyrimidine-specific mismatch base pair DNA N-glycosylase activity molecular_function
GO:0000700 mismatch base pair DNA N-glycosylase activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00029999 lncRNA upstream 139834 35720977 ~ 35723375 (+) True XLOC_014188
TCONS_00029984 lncRNA upstream 483224 35373533 ~ 35379985 (+) False XLOC_014187
TCONS_00030004 lncRNA downstream 40828 35975603 ~ 35981291 (+) True XLOC_014191
TCONS_00030005 lncRNA downstream 176167 36110942 ~ 36115841 (+) True XLOC_014192
TCONS_00030006 lncRNA downstream 644139 36578914 ~ 36579838 (+) True XLOC_014195
TCONS_00030007 lncRNA downstream 690354 36625129 ~ 36627634 (+) False XLOC_014196
TCONS_00028241 lncRNA downstream 690500 36625275 ~ 36627634 (+) False XLOC_014196
TCONS_00028238 mRNA upstream 10819 35799384 ~ 35852390 (+) True XLOC_014190
TCONS_00028234 mRNA upstream 846162 35013129 ~ 35017047 (+) False XLOC_014184
TCONS_00028235 mRNA upstream 846914 35013212 ~ 35016295 (+) True XLOC_014184
TCONS_00028233 mRNA upstream 858262 35002479 ~ 35004947 (+) True XLOC_014183
TCONS_00028231 mRNA upstream 905024 34950200 ~ 34958185 (+) False XLOC_014182
TCONS_00028244 mRNA downstream 1183772 37118547 ~ 37119891 (+) True XLOC_014198
TCONS_00028245 mRNA downstream 1185716 37120491 ~ 37134211 (+) True XLOC_014199
TCONS_00028246 mRNA downstream 1200925 37135700 ~ 37139452 (+) True XLOC_014200
TCONS_00028247 mRNA downstream 1523835 37458610 ~ 37492517 (+) True XLOC_014201
TCONS_00028248 mRNA downstream 1574863 37509638 ~ 37519610 (+) True XLOC_014203
TCONS_00028237 other upstream 84252 35778842 ~ 35778957 (+) True XLOC_014189
TCONS_00028229 other upstream 1116476 34742706 ~ 34746733 (+) False XLOC_014179
TCONS_00028225 other upstream 1655929 34207162 ~ 34207280 (+) True XLOC_014173
TCONS_00028221 other upstream 1727514 34135607 ~ 34135695 (+) True XLOC_014171
TCONS_00028217 other upstream 2097484 33732162 ~ 33765725 (+) False XLOC_014168
TCONS_00028239 other downstream 268303 36203078 ~ 36203195 (+) True XLOC_014193
TCONS_00028240 other downstream 308016 36242791 ~ 36242908 (+) True XLOC_014194
TCONS_00028243 other downstream 745316 36680091 ~ 36680207 (+) True XLOC_014197
TCONS_00028250 other downstream 1734885 37669660 ~ 37669774 (+) True XLOC_014206
TCONS_00028259 other downstream 2321501 38256276 ~ 38256392 (+) True XLOC_014211

Expression Profile

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