RNA id: TU150099


Basic Information

Item Value
RNA id TU150099
length 290
lncRNA type intronic
GC content 0.42
exon number 2
gene id G130243
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 29476428 ~ 29476800 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTGGGGTAAGGAGGATGTCTGGAAGCTATAGGGCAGGGTAGAggtaagggttagtgttagggttatctTATTGAAGTGGTATATTGGGGTAAGCAGAAGGGCTGGAGGCGGTAAGGCAGGGTACACTCTTAGAATTAGTGGTGACTAAGAACCCTGGAGATCCTTGAGGAGCCATTGATAATGGTTCACACTTGCACCTATGGTTAGGTTCTaggagcatgcgcagaccagctggctggtgtatttacggacatgatcaatcaatccttatcccagtgtgctgtcccca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU150095 lncRNA downstream 5487 29470650 ~ 29470941 (-) True G130239
TU150078 lncRNA downstream 33204 29442643 ~ 29443224 (-) True G130223
TU150023 lncRNA downstream 102700 29373159 ~ 29373728 (-) True G130174
TU150006 lncRNA downstream 127780 29348208 ~ 29348648 (-) True G130158
TU149867 lncRNA downstream 279812 29160714 ~ 29196616 (-) False G130028
TU150101 lncRNA upstream 644 29477444 ~ 29478217 (-) True G130244
TU150102 lncRNA upstream 1627 29478427 ~ 29478631 (-) True G130245
TU150103 lncRNA upstream 4168 29480968 ~ 29482639 (-) False hjv
TU150104 lncRNA upstream 4168 29480968 ~ 29481276 (-) True hjv
TU150111 lncRNA upstream 16282 29493082 ~ 29493375 (-) True G130252
XM_021557517.2 mRNA downstream 6390 29460944 ~ 29470038 (-) False LOC110486122
XM_021557576.2 mRNA upstream 1894 29478694 ~ 29486722 (-) False hjv
XM_021557599.2 mRNA upstream 1894 29478694 ~ 29486722 (-) False hjv
XM_021557584.2 mRNA upstream 1894 29478694 ~ 29489250 (-) False hjv
XM_021557591.2 mRNA upstream 1894 29478694 ~ 29489250 (-) False hjv
XM_021557608.2 mRNA upstream 1894 29478694 ~ 29489250 (-) False hjv
TU149442 other downstream 998597 28477186 ~ 28477831 (-) True LOC110534614
TU149362 other downstream 1165696 28310319 ~ 28310732 (-) False G129582
TU149117 other downstream 1326442 28096682 ~ 28149986 (-) True LOC110485663
TU149009 other downstream 1709896 27766157 ~ 27766532 (-) True G129250
TU147564 other downstream 2198304 27271260 ~ 27278124 (-) True LOC110485245
TU150630 other upstream 392246 29869046 ~ 29878568 (-) True LOC110486376
TU151687 other upstream 1412893 30889693 ~ 30895983 (-) True c2h8orf37
TU151689 other upstream 1420226 30897026 ~ 30899564 (-) True trnae-cuc
TU152152 other upstream 1715619 31192419 ~ 31195186 (-) False LOC110486852
TU152139 other upstream 1715666 31192466 ~ 31195186 (-) False LOC110486852

Expression Profile