RNA id: TU148901


Basic Information

Item Value
RNA id TU148901
length 1736
lncRNA type antisense_over
GC content 0.40
exon number 3
gene id G129145
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 29478712 ~ 29480636 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atttaatcaatttaagaataaggctctaacataacaaaatgtggaaataatcaaggggtctgaatactttccgaaggcactgtaagtgttaaAACAGTGCAGTGTTTATAACGGGTCCAACTGTTTACAAAAAGAACGTGGGACTGGGCTAAATACAAAAGGATTTGCATTAACATTAGCATTATCCAATGTGAGAGGtttaggcctagattcaatcagaccCATTGTTAATCGGCACTAGCCAACAACCCCAGAATGAttccaaacacatttaaaaagaAAGGGAAAGTCATTGAGTTACATCTCAGAAAACACAACACTAAAGTATACAACATAATATTACTTCAGTACAAAGCAAAAATGTAATAGCCTAACAATGTCAGGTGATTAGGTGATCTTCTAGGCCAATATAGCAGTAACCTCAAGGGCTGGAGGTGGGGCCAAGAGTAATAATCTGGAGGGAGGTGATGCTATAGGCCAATATAGGCCAAATataaagagagggtgagggaggattGATAGATCCAATAGAATCCAATCCAATAGAATCCTTCTGCGTGCCAACAGGGAGGCAAAGGCAATGGCATCTAGCTGTCTATTGGTCAGGGAAGGATTGTTGTCTGGTACTCCAAAAATTGCAATTTCTGCACTAGGCTGCAACTCTATATCCAATGCTTCAGAAAGGGTTTTAAATATAGTGGACCAGTAGTCTGCCAGACTGGGACAAGACCAGAATATGTGAGTCCAATGCGCCATGGAGCTTTTACACCTGTGACATGTACCATCAATATTTGGGTAGAATTTGGAGAGTCTGGCCTTACTGAAATGGATACCTTAAACTGTATAAGGCCGAGCCGGGCACAAGAGGAGCTTCCATTTACCCCAAGTAAGGCGCTATTCTAGACTTTGTCCGAGGTCTCTCAACCAAGTCCCTTTTCCCTCTCAGATGACGGGTTATCAAGGGACATGATTATCAAACAAATAAATACATGGAAATACCTAAATACACTTGAATGGGATAATTACATTTGATAGCGAAGTCATCAAAATTGGCAAAGGTGCCATCTATATAAAGGTCACTAAACTTAGTAAGGCCATTCCTCTGCCACAGACTTCAAGCTGAATTTAGATTGATTGGATGGAAGAGGTGATTATTACATATAGGATCTTGAATAGAGAAATCACAGAATTTGACGGAATTAAGGCCAAATTTTAAGAGTATTGACAACAATTGGATAGGATGTATAGCGCAAAGCTGAAAGAGTAAGATTGGAGGTGACTAAAGCTGACAAAGAGGAAGAGAAATTGGAGATGACTTCTGTTTGACACCAGTCAGTTTCTGGGGTGCGAAGCCAGTAAACAATATTTTGTATATTCGCTGCCCAGTAATAATACATAACATTAGGAAGGGCTAgttaACTGCCATGAAGCCACACCGTCCCACTGGCGTTAGAAGTTCAGaatgagaaagtgtaggctatatagaaataatgacgcTCAAATTGAAAATTTTACTAAATAATGAGGCtttctatcagcctaatcgaGGTGAAGATTACATCTCACAATCTCGTGTTTATATTTGTAAACAAGGCTAcatgggatttctcttaatgcGACGCTGTGCAGCCAATTGTGGATTTGGCAGCTCTAGCGCAGTTACACCtccgacaccgccaaaacaaccaCTATGCAGATGTCGGCTGAAGTGGACCTGAATGAATAGAGCCATTAGG

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU148911 lncRNA upstream 2354 29476081 ~ 29476358 (+) True G129154
TU148910 lncRNA upstream 2722 29475772 ~ 29475990 (+) True G129153
TU148908 lncRNA upstream 4192 29474253 ~ 29474520 (+) True G129151
TU148906 lncRNA upstream 5222 29473282 ~ 29473490 (+) True G129149
TU148855 lncRNA upstream 111381 29366974 ~ 29367331 (+) True G129099
TU148903 lncRNA downstream 330 29480966 ~ 29482856 (+) True G129146
TU148913 lncRNA downstream 5130 29485766 ~ 29486092 (+) True G129156
TU148914 lncRNA downstream 5636 29486272 ~ 29486741 (+) True G129157
TU148917 lncRNA downstream 8317 29488953 ~ 29489241 (+) True G129160
TU148923 lncRNA downstream 15168 29495804 ~ 29497706 (+) True G129165
XM_036944640.1 mRNA upstream 311 29424822 ~ 29478401 (+) False LOC110534631
XM_021557438.2 mRNA upstream 60415 29369835 ~ 29418297 (+) False LOC110486083
XM_036944567.1 mRNA upstream 60415 29369835 ~ 29418297 (+) True LOC110486083
XR_005034523.1 mRNA upstream 245991 29231578 ~ 29232721 (+) True LOC118937130
XM_021557405.2 mRNA upstream 282072 29172100 ~ 29196640 (+) False LOC100136336
XM_021557640.2 mRNA downstream 64608 29545244 ~ 29553946 (+) False LOC110486208
XR_005039452.1 mRNA downstream 113528 29594164 ~ 29594216 (+) True LOC118944146
LOC118936731 mRNA downstream 174239 29654875 ~ 29662028 (+) True LOC118936731
XM_021557732.2 mRNA downstream 198571 29679207 ~ 29685150 (+) True LOC110486269
XM_021557752.2 mRNA downstream 205219 29685855 ~ 29697686 (+) False LOC110486279
TU148818 other upstream 582 29477617 ~ 29478130 (+) True LOC110534631
TU148590 other upstream 497424 28939899 ~ 28981288 (+) True G128853
TU148570 other upstream 534322 28932056 ~ 28944390 (+) True LOC110485990
TU148197 other upstream 930797 28250842 ~ 28547915 (+) True G128490
TU148132 other upstream 1389267 28088647 ~ 28089445 (+) True G128436
TU148912 other downstream 3997 29484633 ~ 29485130 (+) True G129155
TU150186 other downstream 119390 29600026 ~ 29641096 (+) True G130308
TU150246 other downstream 205331 29685967 ~ 29693851 (+) True LOC110486279
TU150298 other downstream 308940 29789576 ~ 29789831 (+) True G130414
TU151478 other downstream 1219546 30700182 ~ 30700623 (+) True G131491

Expression Profile