RNA id: TU150130


Basic Information

Item Value
RNA id TU150130
length 1499
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G130265
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 29521303 ~ 29522801 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACCCATTTATTCAACCATGAAAATAAAACCCACATTAATATATTTACAGTTTGGTTTTTCAACTCCTATTCAAACTAGTAACATTTGTatgctatacagtggggcaaaaaagtatttagtcagccaccaattgtgcaagttctcccacttaaaaagatgagagaggcctgtaattttcatcataggtacacttcaactatgacagacaaaatgagattttttttctccagaaagtcacattgtagattttttctgaatttatttgcaaattatggtggaaaataagtatttggtcaataacaaaagtttatctcaatactttgttatatacccttttatataccctttgttggcaatgacagaggtcaaacgttttctgtaagtcttcacaaggttttcatacactgttgctggtattttggcccattcctccatgcagatctcctctaaagcagtgatgttttggggctgttactgggcaacacggaccttcaactccctccaaagattttctatggggttgagatctggagactggctaggccactccaggaccttgaaatgcttcttacgaagccactccttcgttgcccgggcggtgtgtttgggatcattgtcatgctgaaagacccagtcacgtttcatcttcaatgcccttgctgatggaaggaggttttcactcaaaatctcacgatacatggccccattcattctttcctttacacggatcagtcgtcctggtccctttgcagaaaaacagccccaacgcatgatgtttccacccccatgcttcacagtaggtatcgTGTTCTTTGGATggaactcagcattctttgtcctccaaacatgacgagttgagtttttaccaaaaagttatattttggtttcatctgaccatatgacattctcccaattttcttctggatcatccaaatgctctctagcaaacttcagacgggcctggacatgtactggcttaagcagggggacacgtctggcactgcaggatttgagtccctggcggcgtagtgtgttactgatggtaggctttgttactttggtcccagctctctgcaggtcattcactaggttcttgtgatcattttgaccccacggggtgaggtctcgcgtggagccccagatcgaggttagattatcagtggtcttgtatgtcttccatttcttaataattgctcccacagttgatttcttcaaaccaagctgcttacctattgcagattcagtcttcccagcctggtgcaggtctacaattttgttactggtgtcctttgacagctctttggtcttggccatagtggagtttggagtgtaactgtttgaggttgtggacaggtgtcttttatactgataacaagttcaaacaggtgctattaatacaggcaacgagtggaggacagagaagcctcttaaagaagaagttacaggtctgtgagagccagaaatcttgcttgtttgtaggtgaccaaatacttattttc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU148934 lncRNA upstream 9170 29511836 ~ 29512133 (+) True G129176
TU148923 lncRNA upstream 23597 29495804 ~ 29497706 (+) True G129165
TU148917 lncRNA upstream 32062 29488953 ~ 29489241 (+) True G129160
TU148914 lncRNA upstream 34562 29486272 ~ 29486741 (+) True G129157
TU148913 lncRNA upstream 35211 29485766 ~ 29486092 (+) True G129156
TU150163 lncRNA downstream 22244 29545045 ~ 29545291 (+) True LOC110486208
TU150165 lncRNA downstream 23484 29546285 ~ 29546516 (+) True G130290
TU150166 lncRNA downstream 23858 29546659 ~ 29547042 (+) True G130291
TU150155 lncRNA downstream 31606 29554407 ~ 29554905 (+) False G130282
TU150156 lncRNA downstream 31689 29554490 ~ 29554855 (+) True G130282
XM_036944640.1 mRNA upstream 42902 29424822 ~ 29478401 (+) False LOC110534631
XM_021557438.2 mRNA upstream 103006 29369835 ~ 29418297 (+) False LOC110486083
XM_036944567.1 mRNA upstream 103006 29369835 ~ 29418297 (+) True LOC110486083
XR_005034523.1 mRNA upstream 288582 29231578 ~ 29232721 (+) True LOC118937130
XM_021557416.2 mRNA upstream 324663 29172111 ~ 29196640 (+) True LOC100136336
XM_021557640.2 mRNA downstream 22443 29545244 ~ 29553946 (+) False LOC110486208
XR_005039452.1 mRNA downstream 71363 29594164 ~ 29594216 (+) True LOC118944146
LOC118936731 mRNA downstream 132074 29654875 ~ 29662028 (+) True LOC118936731
XM_021557732.2 mRNA downstream 156406 29679207 ~ 29685150 (+) True LOC110486269
XM_021557752.2 mRNA downstream 163054 29685855 ~ 29697686 (+) False LOC110486279
TU148912 other upstream 36173 29484633 ~ 29485130 (+) True G129155
TU148818 other upstream 43173 29477617 ~ 29478130 (+) True LOC110534631
TU148590 other upstream 540015 28939899 ~ 28981288 (+) True G128853
TU148570 other upstream 576913 28932056 ~ 28944390 (+) True LOC110485990
TU148197 other upstream 973388 28250842 ~ 28547915 (+) True G128490
TU150186 other downstream 77225 29600026 ~ 29641096 (+) True G130308
TU150246 other downstream 163166 29685967 ~ 29693851 (+) True LOC110486279
TU150298 other downstream 266775 29789576 ~ 29789831 (+) True G130414
TU151478 other downstream 1177381 30700182 ~ 30700623 (+) True G131491
TU151514 other downstream 1225254 30748055 ~ 30749954 (+) True G131517

Expression Profile