RNA id: TU150165


Basic Information

Item Value
RNA id TU150165
length 232
lncRNA type intronic
GC content 0.44
exon number 1
gene id G130290
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 29546285 ~ 29546516 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTACCTGCACAATTATCTGGATGATAAAATAACAGTTTCTTTCAGACAGAAATTGTTTCTCATCAAGTAAGCAACCAGGTTAATTCCCAACGTCCACTGTGTGTATTtggcttttctttaaaaaaacgtTAGTCTACCTGTATGATACATCATGGAGAAAAGACCAATCAAATTTGGGATTATTCTTACTTTGGCTGTTTCAGGTATGGCAGAAacgtatctatctatcta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU150163 lncRNA upstream 994 29545045 ~ 29545291 (+) True LOC110486208
TU150130 lncRNA upstream 23484 29521303 ~ 29522801 (+) False G130265
TU150125 lncRNA upstream 23484 29521577 ~ 29522801 (+) True G130265
TU148934 lncRNA upstream 34152 29511836 ~ 29512133 (+) True G129176
TU148923 lncRNA upstream 48579 29495804 ~ 29497706 (+) True G129165
TU150166 lncRNA downstream 143 29546659 ~ 29547042 (+) True G130291
TU150155 lncRNA downstream 7891 29554407 ~ 29554905 (+) False G130282
TU150156 lncRNA downstream 7974 29554490 ~ 29554855 (+) True G130282
TU150172 lncRNA downstream 31145 29577661 ~ 29581410 (+) True G130297
TU150228 lncRNA downstream 117494 29664010 ~ 29671945 (+) True G130345
XM_036944640.1 mRNA upstream 67884 29424822 ~ 29478401 (+) False LOC110534631
XM_021557438.2 mRNA upstream 127988 29369835 ~ 29418297 (+) False LOC110486083
XM_036944567.1 mRNA upstream 127988 29369835 ~ 29418297 (+) True LOC110486083
XR_005034523.1 mRNA upstream 313564 29231578 ~ 29232721 (+) True LOC118937130
XM_021557416.2 mRNA upstream 349645 29172111 ~ 29196640 (+) True LOC100136336
XR_005039452.1 mRNA downstream 47648 29594164 ~ 29594216 (+) True LOC118944146
LOC118936731 mRNA downstream 108359 29654875 ~ 29662028 (+) True LOC118936731
XM_021557732.2 mRNA downstream 132691 29679207 ~ 29685150 (+) True LOC110486269
XM_021557752.2 mRNA downstream 139339 29685855 ~ 29697686 (+) False LOC110486279
XM_021557744.2 mRNA downstream 139352 29685868 ~ 29697686 (+) False LOC110486279
TU148912 other upstream 61155 29484633 ~ 29485130 (+) True G129155
TU148818 other upstream 68155 29477617 ~ 29478130 (+) True LOC110534631
TU148590 other upstream 564997 28939899 ~ 28981288 (+) True G128853
TU148570 other upstream 601895 28932056 ~ 28944390 (+) True LOC110485990
TU148197 other upstream 998370 28250842 ~ 28547915 (+) True G128490
TU150186 other downstream 53510 29600026 ~ 29641096 (+) True G130308
TU150246 other downstream 139451 29685967 ~ 29693851 (+) True LOC110486279
TU150298 other downstream 243060 29789576 ~ 29789831 (+) True G130414
TU151478 other downstream 1153666 30700182 ~ 30700623 (+) True G131491
TU151514 other downstream 1201539 30748055 ~ 30749954 (+) True G131517

Expression Profile