RNA id: TU150172


Basic Information

Item Value
RNA id TU150172
length 3114
lncRNA type antisense_over
GC content 0.43
exon number 3
gene id G130297
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 29577661 ~ 29581410 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

taggtaacagaatttattctcggagcgcgttaccacgagcaacagtttatatacaataacatgacgtcatttcattgcttctAAAATGAATCTCCTCCTCTAGACTGGGACAAAGggacacacaacacaactgaattaaCTTGACTCCtcaccattatcgatcaccacttagctgacagttctaattaacagaaaacctaggaatgcactcactgccttatcaaaaacaccccagagctcagttacgtcggttcaaccataggttatctaccttatctgtttacttaatccacaaaccattcctttcttcctagttggaatggtgttcattaacttgaattactccttgtccgtgtcacacaatcccttcttatgaactcatattgttaatcagatataataaaacagagtataagttttaGTTAGTTTCATTTAAAATAAGACtattgttcagtcatttaatcataattttccTAACAATATGACATTGTTTTAGCACTACCAGAGAAGAAGAGGTGAAGCGAGATGGTTCACTCCATTCAACATCTGTCCACGTGGGAACCACAAACCGCTTGCCTTTCCGCCTTTGGAACGACTCGCATTGTTAGGCAGAGACAAGACGATCTCATCATTATTTACAGTATCTCTGGCACTACCCATGGGTCGTGTTCGAGAAAATCAAAACTGCAAAGTATCATTGGTAAATTGTATaggactgatctacaaataatgagttgttatttatgatgcaatgtgatttgtagatcagtcagtcacccaAGTCACCCAAGTCATTTTTGATGCTCTCGAACATGGCCACAGAGTTGTTAACTACAGCACAAGACATCATtcaatctacagttgaagttggaagtttacatacaccatagccagatacatttaaactcagttttttcacaattcctgactttgaatcctagtaaaaaatccatgtcttaggtcagttaggatcaccactttattttaagaatgtgaaatgtcagaatgaaagtagagagagatttatttcagcttttatttatttcatcacattcccagtgggtcagaagtttacatacactcaattagtatttggtagcattgcctttaaattgtttcgggtagccttccacaagcttcccacaatcatttgggtgaatgttggcccattcctcctgacagagctggtgtaactgagtcaggtttgtaggcctccttgctcacacacactttttcagttctgcccacacattttctataggtttgaggtaaGGAccctgtgatggccactccaatgccttgactttgttgtccttaagtatgcttgaggtcattgtccatttgggagacccatttgcgaccaagctttaacttcctgactaatgtcttgagatgttgcttcaatatatccacatcattttcctacctcaagatgccatctattttgtgaagtgcacctgtccctccttcagcaaagcacccccacaacatgatgctgccacccccgtgcttcacggttgggatggtgttcttcggcttgcaagcctccccctttttcctccaaacataacaatgttggagcagtggcttcttccttgctgagcggcctttcaggttatgtcaatataggactcgttttactgtgaatatagatacttttgtacccgtttcctcgagcatcttcacaaggtcctttgctgttgttctgggattgatttgcacttctcgcaccaaagtacgttcatcactaggagacagaacgtgtctccttcctgagcggtatgacggctgcgtggtcccatggtgtttatacttgtgtcctattgtttgtacagatgagcgtggtaccttcaggcatttggaaattgctcctaaggatgaaccagacttgtggtctacagtctttccccccccccccccccatgatgccaagcacagagacactgagtttgaagTGATGGAGAGCTGAGAAATGAGGCATTTTTGGTAAGTACTTGGGGGCAGCATTCTTTATGCATGTCCACTATTATTTGGTGACAGCCAAGGGATGTGAAAGATTCAGAAATGTAATTTCTTCTTTTTATTATAGTAGGCGTAGTAAAAGAGAATGAACATTCCTACAGAAATAAAGACACTTGTTTTGTAGCCTATAGAAAAAGATGTCAGCTGAGGAAATGTAGGATTACAAAAATTGTATTCATTTGAAATGAATAGAAACGTGCATTATCTGTCTGTTTAAGTTGAAGACAAATAGGCTCCACGTGTAAATAAACCTACCCTTCACCCCCCCTCCCAAACACACTTTTTAATTTACTTATTTATAAATCTTCAACAAGCTTAAATCCACCTGATGTTATGTCATCAAATGCCTGTTGAAAAAAATTGACTCTCGATgaagatAGATATCTTCTGAGTCCATTCATTCTGCCTTCTTTATAGAGGGAGGTGAGACTTCCAGGGGGTCATTCTCTTCCTTGTATCCCCCCTCTGCAGTGTCCGATGGGCCCAATTTATATCTGCCCTGCAGGTGGCACCCATAGAGCCCTCCTAGCactagcacacaaacacacacagccaggagAAATGATACTGCCACCAATTCACTATGGTAATTCTTGGCTGTTAAGGGTTCATTGTGGTCTTCTGGTTTCTCACTGCTGGAAAGGGGGTCTGGGGTCATATCCTCTGGCTTCTCAGTACTGGAATTGGTGTTTGGAGTCTTGTCGGTTGTGGTTACGTCTGTGGTGATGACTGGATCCTCCCCAAAGTTAATGTGGTCTAGCTGGTCAGTGTCGCTTGGAATCTCCATCATAGTGGTCATCTGGTCTTTAGTCTCTGTGGTGGTGATCCGAAATTGAACGGCTGGAGTATCAATGGCCTGAGGAGAGAAACTCACAGTGTAGATAGCTGCTGTCTCCTCATAACCCCTCTCAACAGAGATGCAGTGGTAGATTCCGAAGGTGTCAGGTGTGGCCATGAAGACCAGATTCTCATCTCCAGAGTGAAAGAAGAGGTGGTGGGGCAGAGCGCTAGCTTTGGCGGACTTCCAACTCAGGGTTGCCAGATTGGAGGATCTGGAACACTTCAACCTCACTACTTCATTTAGCTGTGCGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU150155 lncRNA upstream 22756 29554407 ~ 29554905 (+) False G130282
TU150156 lncRNA upstream 22806 29554490 ~ 29554855 (+) True G130282
TU150166 lncRNA upstream 30619 29546659 ~ 29547042 (+) True G130291
TU150165 lncRNA upstream 31145 29546285 ~ 29546516 (+) True G130290
TU150163 lncRNA upstream 32370 29545045 ~ 29545291 (+) True LOC110486208
TU150228 lncRNA downstream 82600 29664010 ~ 29671945 (+) True G130345
TU150215 lncRNA downstream 145141 29726551 ~ 29744867 (+) False G130335
TU150216 lncRNA downstream 145141 29726551 ~ 29732509 (+) True G130335
TU150294 lncRNA downstream 203716 29785126 ~ 29785365 (+) True G130410
TU150295 lncRNA downstream 204294 29785704 ~ 29785943 (+) True G130411
XM_021557640.2 mRNA upstream 23715 29545244 ~ 29553946 (+) False LOC110486208
XM_036944640.1 mRNA upstream 99260 29424822 ~ 29478401 (+) False LOC110534631
XM_021557438.2 mRNA upstream 159364 29369835 ~ 29418297 (+) False LOC110486083
XM_036944567.1 mRNA upstream 159364 29369835 ~ 29418297 (+) True LOC110486083
XR_005034523.1 mRNA upstream 344940 29231578 ~ 29232721 (+) True LOC118937130
XR_005039452.1 mRNA downstream 12754 29594164 ~ 29594216 (+) True LOC118944146
LOC118936731 mRNA downstream 73465 29654875 ~ 29662028 (+) True LOC118936731
XM_021557732.2 mRNA downstream 97797 29679207 ~ 29685150 (+) True LOC110486269
XM_021557752.2 mRNA downstream 104445 29685855 ~ 29697686 (+) False LOC110486279
XM_021557744.2 mRNA downstream 104458 29685868 ~ 29697686 (+) False LOC110486279
TU148912 other upstream 92531 29484633 ~ 29485130 (+) True G129155
TU148818 other upstream 99531 29477617 ~ 29478130 (+) True LOC110534631
TU148590 other upstream 596373 28939899 ~ 28981288 (+) True G128853
TU148570 other upstream 633271 28932056 ~ 28944390 (+) True LOC110485990
TU148197 other upstream 1029746 28250842 ~ 28547915 (+) True G128490
TU150186 other downstream 18616 29600026 ~ 29641096 (+) True G130308
TU150246 other downstream 104557 29685967 ~ 29693851 (+) True LOC110486279
TU150298 other downstream 208166 29789576 ~ 29789831 (+) True G130414
TU151478 other downstream 1118772 30700182 ~ 30700623 (+) True G131491
TU151514 other downstream 1166645 30748055 ~ 30749954 (+) True G131517

Expression Profile