RNA id: TU150573


Basic Information

Item Value
RNA id TU150573
length 1513
lncRNA type antisense_over
GC content 0.39
exon number 2
gene id G130657
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 29762371 ~ 29770692 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTGCATAGAAAACCTACCCATAGGTTCTCCTCATATAAAATACTTCTCGCATTTTCACATACCCAAATTCAAAACATAATGTAGATCTCCCATTTAGTCATTCCCATTCGGCAAGCTTGGTCATTACCATGAAAAGTCACTCTCTTCTACCATAAACCACTGAGTTAACATTATTGTAAAATGACCTAGTATAATCTGGAAGACTATTATGAATACAAAAATATGTCATTTTTAATTATCTAATTAAGAGCCAATGATATTAACATAAAGTGCAACAGAATATAAAATTGAAACTTTCTATCCCTTCACTACTTTTGCATGGTCACAGCATCATATCTGTCTGACCTAAAATGATAGCTGTGCACACTCAGTGTATGGATGTGAATTCTAACATTGTTTCATTCCTCTGAGAGAATATGTCAACTGTCAAAATGCTCGAACACACTGAGGTACAGAACTACCGTGGAATGACTAGAGggttacagacagacatacagttgaagtcggaagtttacatacacctcagccaaatacatttaaactcagtttttcacaattcctgacatttattcctagtaaaaattatgttttacgtcagttaggatcaccactttattttaagaatgtgaaatgtcagaataaaagtagagaattatttatttaagcttttatttctttcatcacatttccagtgggtcagaagtttaaatacactcaattagtatttggtagcattgccttgaaattgttgaacttgggtcaaatgtttcaggtagccttccacaagcttccctcaataagttgggtgaattttggcccattcctcctgacagagctggtgtaactgagccaggtgtgtaggcctccttgctcgcgcatgctttttcagttctgcccacacattttctataggattgagggctgggctttgtgatggtcattGCAATACcccgactttgttgtccttaagccattttgccacaattttggaagtatgcttggggtcattgtccatttggaagacccatttgtaaccaagttttaacttcctgactgatgtcttgaaatgttgcctcatatatttccacataatttcccaccctcatgatgccatctattttgtgaagtgtaccagtccctcctgcagcaaagcacctccacaacatgatgctgccacccccgtgcttcacggttgggatgttgttcttcggcttgcaagcctcccccttttccctccaaacatatacgatggtcattatggccaaacatttgtatttttgtcagaccaggggacatttctccaaaaagtatgatctttgtcaacatgtgcagttgcaaacctggcttttatatggcggttttggagcagtggcttcttccttgctcagaggcctttcaggttatgtcgatataggactcgttttactgtggatagatacttttgtacccatttcctccagcatcttcacaaggtcctttgctgctgttctgggattgatttgcacttttcgc

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU150443 lncRNA downstream 191596 29569180 ~ 29570775 (-) True LOC110486216
TU150472 lncRNA downstream 193388 29568651 ~ 29568983 (-) True G130567
TU150470 lncRNA downstream 196053 29566107 ~ 29566318 (-) True G130565
TU150469 lncRNA downstream 196339 29565808 ~ 29566032 (-) True G130564
TU150468 lncRNA downstream 197079 29564961 ~ 29565292 (-) True G130563
TU150588 lncRNA upstream 18962 29789654 ~ 29789873 (-) True G130671
TU150590 lncRNA upstream 21272 29791964 ~ 29792173 (-) True G130673
TU150591 lncRNA upstream 22109 29792801 ~ 29793179 (-) True G130674
TU150592 lncRNA upstream 23660 29794352 ~ 29794580 (-) True G130675
TU150937 lncRNA upstream 220704 29991396 ~ 29991629 (-) True G131002
XM_021557800.2 mRNA downstream 10193 29743074 ~ 29752178 (-) False LOC101268921
XM_021557809.2 mRNA downstream 10193 29743074 ~ 29752178 (-) False LOC101268921
XM_021557818.2 mRNA downstream 10193 29743074 ~ 29752178 (-) True LOC101268921
XM_021557827.2 mRNA downstream 10194 29743074 ~ 29752177 (-) False LOC101268921
XM_021557839.2 mRNA downstream 21113 29731918 ~ 29741258 (-) True LOC110486325
XM_021557876.2 mRNA upstream 34293 29804985 ~ 29812179 (-) False polr3glb
XM_021557862.2 mRNA upstream 34293 29804985 ~ 29812180 (-) False polr3glb
XM_021557869.2 mRNA upstream 34293 29804985 ~ 29812180 (-) False polr3glb
XM_021557884.2 mRNA upstream 34293 29804985 ~ 29812180 (-) False polr3glb
XM_021557893.2 mRNA upstream 34293 29804985 ~ 29812180 (-) False polr3glb
TU149442 other downstream 1284540 28477186 ~ 28477831 (-) True LOC110534614
TU149362 other downstream 1451639 28310319 ~ 28310732 (-) False G129582
TU149117 other downstream 1612385 28096682 ~ 28149986 (-) True LOC110485663
TU149009 other downstream 1995839 27766157 ~ 27766532 (-) True G129250
TU147564 other downstream 2484247 27271260 ~ 27278124 (-) True LOC110485245
TU150630 other upstream 98354 29869046 ~ 29878568 (-) True LOC110486376
TU151687 other upstream 1119001 30889693 ~ 30895983 (-) True c2h8orf37
TU151689 other upstream 1126334 30897026 ~ 30899564 (-) True trnae-cuc
TU152152 other upstream 1421727 31192419 ~ 31195186 (-) False LOC110486852
TU152139 other upstream 1421774 31192466 ~ 31195186 (-) False LOC110486852

Expression Profile