RNA id: TCONS_00030005


Basic Information

Item Value
RNA id TCONS_00030005
length 4758
lncRNA type antisense_over
GC content 0.38
exon number 2
gene id XLOC_014192
representative True

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 36110942 ~ 36115841 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

atctattttcatttttttttattccaaaaactTCAAAATAGGTTTCAAGTTCAAGAAAGTAGAATAAGCTTAAACACAATGCAAAGCATCATATACAGAcagataaaatacattttatatattgcaGACAAGCCATGTTGGGTATTACATATGTACAATATGTAAACTATATAcaatcttttttacatttacaaaaaaaagtctcTATTTTgtctttgtatatatatattttatatatatatttttataatcccCACTAGCATTTGTACTACAATAATGAAAAACATTTACAGATCTGTCAATACACTTTCTCTTTTTTATATTACAAATTTATTTCCATAAAAATATATCTCTGTACAAAAAAAGGTTTCTATTCATTAGTTCTCCTTTCAGCGTCAGAGTCTCTGTCTGGATATCCGCAATGGACCGCTCCATTAAGGTCCTTGAAAGTTTTAAAGTCacttttcaaaaaaagaaaaatcctttTGGTCAAGTACGCAACTCAAGACTGACTGTATTCCTTTAGGCTTTGGATAGCCAGAGCAGAGCAGTCCTTTAAAAGTCCTTCAAGGCTGGGCTTGTATAACTTTTACCATCTGGAGAGAAATGCAAGTTGGTGGTTCTCAACATGAATGCGataccaataaaataaaataactgcaaACCAAAATATTTTCACATTGACCTCCACATAAATCTGAAATACTCATCCCATAGTACACATCTGTAATTTAGGCAAAACATATTTTGAGGGGAGCtctttttaattatgtattttgcTGAATGTTAACCCTAGCAGGTATAGCATAGATGCTtccaaaattaaaatacattcagtacaATCCTGATTTCAATCACAACCAAACTTTCAGCCTTTGCACTAAAAATTTGAGAGTTATGTTGATTCTACTATGCGTTTTGAGACTACAAACAATGAATATAATCAAGTCTTATCCAATCACAGAAGCacacagaataaaaaataaaacaaagcaaaacaaacattcaaACTAAGAAACAAACACccttccaggaaaaaaaaaaaaactatacgaGCATTGCATGTGCAATCATGTTAAAACATATACTGAACATATGAAACACACATGGTACACGATGGAACGCATGTGGAACACATTGATCACACATGATGCACAATGGGATTCATGTGGAACACATTTTGAACACACATGATGCACAATGAAGCATATGTGGAACACATTGAACACAACTGAATGCATGTGGAACACATACTGAACACACATGGTACACAATGGAACGCATGGAGAACACATATGGTTCACAAATTAAGCATGTGCATCACACGTAGAACGTATGTTCCACAATATAACACAACACAATATAACATAGGAACACAATATAACACTGATGCAGTATACATTGGACACACATGGAACAAATTGaacatgtaaaacatttttagaaCATGTGGAAAAAGTGGAGCACACGTGCAATACACAGTGAACACAATGGGAACACAAATTGAACATGGAACAGACGTGAAAGGCATATGTGGAACACATGACTGATATGAGACATGTGGAACACATgtaacacacactgaacacaagTGGAACACAAATCAAACAGGTTGAACAAAAGTGGAATGCACATGTAATACACATTGAACACACATGGAACCTAAATTGAACATGTGGAACGAGTGTGAAACGTACATTAATGTAAATTGAACACAAATTGAATGTGGAACAAGTGGACTGCAAGTGGAATGCACATGTAATACACATTGAACACATGTGGAACCCAAATTGAACCTGGAACACACGTGGAACTCACATGGAACATATGTGGAAGCATGGAATGTGTGGTTTTAGAACATTTTCATGAGAAAAAACAATGTGATGTTCCAAAATCACACATTTCATATTTCACATGGACAAAAAAAGGGCTGTCATTCACTCGTCACAAGTATGTGAATATACGAGAATGCTGGTCTCCATtgtagtgtaaaataaaatacacaagggGCTGTTTGTTGTGTTTCACATAAACATGTAAGCACCAGTTTTGGGCTGATGAAAGCGCCTGAGACTGACAACATGTCAGCTTCGAGAAGGGAACATGTTTGTTTTAGTGATGAGTGAAATGACGAAACTGTTACAAGCTGAAACTCTGACTACAATACGTTGGGTAGTTCAGCTAATTTGCCGTTTGGTTGAATTTCTCTGTATGCATGTCCACAAAATAAGCTGATGCCTTTTACTTGGGCAAAGCAGCACCTTTCAGCTTTTGGTTTTGCTATGATATTAATGGTATAAGAATATTGAAATGACACATGCTAGGTTAAAGAAGAGAAAAGAGTGCTCCATTAAAGTGCAGGTTTTAACATAAAGGAGTTTATTTGGGGGTGCTGGTCTTTATAGTGTGATTCTGAGAATAACAAAGACTTAACTCTCGACCAGACACACAAAACGACAAGCAGCTTCTTTGAAATTCTGCCCTAGCAACCTGCAGCTCTTGACCAgtgtgcaataataataaaaatggagCAATAAGAAGAGATTTGACACACCACATATAGAGTTACCAAGGCACTGTTACGAGAAACAGATGGACCAGCATGAAACACAGCCTGCCTGGACACTTCAACAACATTttgggaaaaaaatgaaaaattaaagtaGAGGAGGTGACTTTGGAGCCCTTGTgcctttatttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttatcacaAGCAAAGTGCATTGTTTGTAGGATTTTAAAAGGAGCGGTTTCTAATGTCAGCATAATAAATCTGGCAGCATCGCTGTTGTTGTTGGGTTGCTGAGACAAAAATGCTACCGTACGCCAAGTCAGGCTGAGATAAACTGCAGCAAAATTATGTCTGATATGTGGCAATCTGTAATAAAAGAACGCCTGAATGACAGTAAATACAAAATGAATGTCAATAGGTTGAAGATAATGCACCGGCTAAACCTGGCCCGTAAAGCCCCATGGGAAATACAATCTTTGCTTTTTCGATCAACATACAATTGAAAACAGCTCGGGGTAATATCATATTAACACAGCCAAGATAGGCTACCGATTTCAAAAGTAATAAACCTGTAAAAGCAATTATATCACTGATTGATTGGAGAAGCCGAAGAGTACAGCAAATAAACTGGAATTCCAATCCCGGCGTCAGGTAACAGAGGCAGTAAAACAAGAAAATCGAAGCGATAATGCAGAAACAAGCGATGACAATAATGTTCAATAACTCAATTATAAACAGCCATGAAAGTTACGCCGTACGCAATCCGACTCACTGTCAGATCCAGGTTGTAAACTCCCCAAACTGAACCTTCCCGTCAAGTTATTGGGGGCAAATACATGCAAGTAAACAACCAGCCTGGGATTAATATTTCAAGGAGTGACTTCTAAGCCCCTTCCGCTTATCGTAAGTGTGTCGTGGGCATGGATGACGTGGAGGAATATGCTGGGAAACAGACTATGACACAAAGCTACAGAGATTAAATATTTTCATGCTCATTTGGTGGTGGCTCCTTATGACTAAAACCCTCGCATCATCCTCCTTATCCTAGACTTTAGAACTTGAGGACCGAAAGCAGACCCTCCCCTGGCTATGAAAGAGTTTTATTTGCTTCAAGTCTTTAAGggctgttttgcttttatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatataaaagaaatctCTACATGGTTGATTCGTGACATTCAGAAGCCCACCTGAAACCTGTCTGACATCAGGAATATTAGTAAATGCTAACAAGCGGCTCCTCCTCATGATACCAAAGCCCACAAATCAAGAACATCTCAACTTTGAGATGGAGAAATTTCCGACGGCCCTCCTGGGAAATTCAGATAAAATCCAACCCTTCAATGGTAGGAAATAACGGCCATGAAGTCAGCTTCATAAAGCCTCAGAGCACAAAAAACACGTGCGACGTGTCTTTTCATGCTCTTTCCGCTGGGCTTCTCGAAGGGTCAGACTGTCCGTTCTCAGTCGGGATCATGATAAGATGGTGGCAAATCACCACCGTTCCCTTCGGGCTGGAATGAGAAAAGAGGTGCTACAGCTAGAATCCATGTCTTCTAATAAGCCTCCGAATCTCATTCCACTTCAATTGTGGCGTCAGGGAACCAACGTGTGTCCTCAGCGAAGTCTGCAATGTGATTTCAGTTCAAGGAGATAAAACCAGACAAAATGGGATCCGTGAAAAGAACTGAAagtataaaagtaaaacaaagttTCGACTCTCCAGCAACGTGCTTCTCTTTAACTTCCAGCTCACGTGAAGAACTCCTCCACTTCTAGAGTTTAGAATGGACAGAATTAGTTTGACCGGATAATGTTTCTCttgtcttgtcttttttttttttttttggcaagcaAGTTTCGCATGTGTCTCTTTTACCGCAGTCAAACAGGACGTTTCCTCAGAAGGAAAAAAAGAGGAGACAGCAGAAGAGTGTAGAAACAGAGTTTTAGCTAGCAAACACTGATCAGTGTGTCTGTCGATGCACTTTTTCAGCATCGTTGTTAAGGATTTTCACTGTTTGTCACGATTGGAATTGgtttacaaatgaaaaacaaatcaaaatatatCTCCTCGTCTTTCGTCCATCCAAGTGACCCATTTGTAACTATGGGAACAGTTGTGTGGAGATGGAAAGATTAC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00030002 lncRNA upstream 91988 35863209 ~ 36018954 (+) False XLOC_014191
TCONS_00030004 lncRNA upstream 129651 35975603 ~ 35981291 (+) True XLOC_014191
TCONS_00030001 lncRNA upstream 176167 35863209 ~ 35934775 (+) False XLOC_014191
TCONS_00030000 lncRNA upstream 176167 35863209 ~ 35934775 (+) False XLOC_014191
TCONS_00030003 lncRNA upstream 176167 35863271 ~ 35934775 (+) False XLOC_014191
TCONS_00030006 lncRNA downstream 463073 36578914 ~ 36579838 (+) True XLOC_014195
TCONS_00030007 lncRNA downstream 509288 36625129 ~ 36627634 (+) False XLOC_014196
TCONS_00028241 lncRNA downstream 509434 36625275 ~ 36627634 (+) False XLOC_014196
TCONS_00028242 lncRNA downstream 509845 36625686 ~ 36627634 (+) True XLOC_014196
TCONS_00030008 lncRNA downstream 1378478 37494319 ~ 37498679 (+) True XLOC_014202
TCONS_00028238 mRNA upstream 258552 35799384 ~ 35852390 (+) True XLOC_014190
TCONS_00028234 mRNA upstream 1093895 35013129 ~ 35017047 (+) False XLOC_014184
TCONS_00028235 mRNA upstream 1094647 35013212 ~ 35016295 (+) True XLOC_014184
TCONS_00028233 mRNA upstream 1105995 35002479 ~ 35004947 (+) True XLOC_014183
TCONS_00028232 mRNA upstream 1153054 34952582 ~ 34957888 (+) True XLOC_014182
TCONS_00028244 mRNA downstream 1002706 37118547 ~ 37119891 (+) True XLOC_014198
TCONS_00028245 mRNA downstream 1004650 37120491 ~ 37134211 (+) True XLOC_014199
TCONS_00028246 mRNA downstream 1019859 37135700 ~ 37139452 (+) True XLOC_014200
TCONS_00028247 mRNA downstream 1342769 37458610 ~ 37492517 (+) True XLOC_014201
TCONS_00028248 mRNA downstream 1393797 37509638 ~ 37519610 (+) True XLOC_014203
TCONS_00028237 other upstream 331985 35778842 ~ 35778957 (+) True XLOC_014189
TCONS_00028229 other upstream 1364209 34742706 ~ 34746733 (+) False XLOC_014179
TCONS_00028225 other upstream 1903662 34207162 ~ 34207280 (+) True XLOC_014173
TCONS_00028221 other upstream 1975247 34135607 ~ 34135695 (+) True XLOC_014171
TCONS_00028217 other upstream 2345217 33732162 ~ 33765725 (+) False XLOC_014168
TCONS_00028239 other downstream 87237 36203078 ~ 36203195 (+) True XLOC_014193
TCONS_00028240 other downstream 126950 36242791 ~ 36242908 (+) True XLOC_014194
TCONS_00028243 other downstream 564250 36680091 ~ 36680207 (+) True XLOC_014197
TCONS_00028250 other downstream 1553819 37669660 ~ 37669774 (+) True XLOC_014206
TCONS_00028259 other downstream 2140435 38256276 ~ 38256392 (+) True XLOC_014211

Expression Profile

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