RNA id: TU150350


Basic Information

Item Value
RNA id TU150350
length 3200
lncRNA type read_through
GC content 0.39
exon number 2
gene id G130451
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 29855976 ~ 29932819 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGTTGAAAACATCGCTTAAACTTTATTGACAGAATATGATGCAAGCCATTGGAGTCATATTGTGACAGTATTGCGTTGTGTTGTTGAGAGTATTCCATGCTCTGTTTGACACAACATCTAGTACTCCTTCATCTTTTAAAAGGGCTATTTGAAGACTTGCTTTATGACCATGGCTAGGTTAGCACATAGCTTATCCATTAGGACTGTATTTTAAACACACAGCGAGTAGTTCATCTCATGAGTCTCTTCCTTACTTATATGTGGACCATGCACTGCCTTTCCCTGGAAAATATATACTAggagaaaaaaaaagataatGAAATGTCCCATTCCAGCTGTCTGATCTACGCCAAGCCTTACAATAATTTTTACGAGGAGAAATTTTTAAAAGTGTACGATAATGAGAATAATATGAACTAATCGCTAACTGAACATCAATGCTGCTGAAAGTAAAGCATGTAATAACAGCGGAGCACTTCATACAATGTATAGACAAAGTGGTCCTGGGATAGATCAAACAACTCTTCATAAAAGATGATCCTACTGCCTCTAAGTACTAGAAAACAAGATATAGAAAGTTGAGAATGCTTTTGATAGTAAATAGAAAAACCCcacacatttttgcacatttgtgGCACAGGAATATACAGTGATCAATAAACAAAATGACAAGCTTCACAATATCCATGGCTTTTTGTTAGTTTTTCTATACAATGCATACCCACCTTGAATTCAATGTGTCTTATTCCACAAAGGAGGAACGCATATGTACAATAAATACGTCATTATTATAACTACAGCCGTTCAAGATAATATTACCTGACAATTTCTTAAGTTAATTAtatttcttgattttttttttcccccatttgTTTGTAAAAAATTGTTAGAAATTAAATTGAATAGACAGGTCAGCAAAATgtagttttttaaatgtttgaaaCCTTACAAAAATGACATCTGAAAATGCTAtttttcctgtgttttttttctttacgttctttaaaacaaaaatgttaaaATGGTGCATCTGGCATagtttgagaaagagagaaatattgATGATGAAGTAATTCCATAACGCATACATACAACAAAGAGGACAAAGATAACTATCAAAAACAGTGAGGCTGAAAATCACCCATGGGTCACTGTTGTCCATCCCAAACAGTGATCTAGCCGTGGGGTGTTCTGTGTTATTGGACTACGGCAAaccctgggtcgtgttcattcgGCACGAACAGTAGGAAAGGTTTTCAGACGGACAACAGAAATGAACGCCCCTATAGGACAAGTGCAGGTAGTACTACCTCTGTTTAAAATATTTGCTTCAGTTTGGTGCTTACTGAACACGGCCAATACAACATCTGTTCCATCTGGGTGCAACAAAAATAGTGCTTATACTACTGTATATGGGAGTAAGGCTACCTAACTAGTTGGGATACTAAATGGATAAAATAGTAACATTCAGCACAAATACTCAAATGAACTTTATCTTCCCTGTGTCTCAAAATATTGCACCTGCTTTTGAAGTTTATCAAAAAGGGCAAGGAGTAATCCACTGCTCTCTGGCAATatgtttattttacattttaaacTGCAGGGTATAAGAGGCAATAACCAGGCAACTCCTGCTTGCAAGAAGAAAATTAAATTGGAATTAATATTTCCTGCTGCTTTAAAATGGATGCACTAGTATTTGTTACTTCCAAATGTTATCCTGAAATAATTCAACATCAGGCATTGCTGAAATAGAGCCACAATTATCATGAGATGGAACAATAATCAATTCAATAATAATCAATCAATTCACCCTGGATTCCTGGTGGACAGAAACAATATCCCTACTCTCTGTACCTAAGTGCTCTGCATGTACAGTCCTGTGCATTGCCATAACccatcatgtacagtaccagtcaaaagttgacacacctactcattccagggtttttctttgattttactatattctacattgtataataatagtgaagacatcaaaactatgaaataacacatgtgaaatcatgtagtaaccagtgttaaacaaatcaaaatatattttatatttgagattcatcaaagtagccacccttcgccttgatgacagctttgctcacgcttggcattctctcaaccagcttcatgagttagtcacctggaatgcatttaaattaacaggtgtgccttgttaaaagttaatttgtggaatttctttccttcttaacgcgtttgagctaatcagttgtgttgtgacaaggtagggttgatATACTgaagatggtcttttaccaaaatggggttaagtccatattatggcaagtctagctcaaataagcaaagagacacggcagtctatcattactttaagacatgaaggtcagtcaatccagaacatttcaagaactttgaaagtttcttcaagtgcagtcacaaaaaccatcgagcgatatgatgaaattggctctcatgaggaccaccacaggaaaggaagacccagagttacctctgctgcagagaataagttcattagagttaccagcctcagattgcataccaaataaatacttcacagagttcaagtaacagacacatctcaacatcaactgttcagaggagactggtctgatgtgtccaaatttAAGACcaccaaccaccatgtctttgtgagacgcagagtgggtggacagatgatctctgcatgtgtggttcccactatgaagcatggaggaggtgatgtgatggtgtggggttgctttgctggtgacactgtcagtgatttatttagaattcaaggcacacttaaccaacatggctccCACAGCATtgtgcagcgatacaccatctcatctggtttgcgcttagtgggactcatttgtttttcaacaggacaatgacccaaaacacatctacaggctgtgtatgggctatttgaccaagaaagagagtgatggaagacctggccgggtggtgccagaataacaaccaatCCCTCAACGTAACTAAgcctaaggagatgattgtggactacaggaaaaggagcatcgaccactgcctggtacagcaattgctcggcctccgaccgtaaggcactacagagggtagtgtgtacggcccagtacatcactggggcaaagctgcctgccatccaggacctctacaccaggcggtgtcagaggaaagcccgaaaaattgtcaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU150303 lncRNA upstream 15194 29840459 ~ 29840782 (+) True G130419
TU150319 lncRNA upstream 49845 29805174 ~ 29806131 (+) True G130427
TU150308 lncRNA upstream 56149 29799535 ~ 29799827 (+) True G130424
TU150295 lncRNA upstream 70033 29785704 ~ 29785943 (+) True G130411
TU150294 lncRNA upstream 70611 29785126 ~ 29785365 (+) True G130410
TU150697 lncRNA downstream 61098 29993917 ~ 29994140 (+) True G130773
TU150806 lncRNA downstream 222477 30155296 ~ 30156840 (+) True G130879
TU150730 lncRNA downstream 273239 30206058 ~ 30209730 (+) True LOC110534650
TU150834 lncRNA downstream 296596 30229415 ~ 30229738 (+) True G130906
TU150835 lncRNA downstream 297619 30230438 ~ 30230681 (+) True G130907
XM_021557906.2 mRNA upstream 22171 29815780 ~ 29833805 (+) True LOC110486369
XM_021557850.2 mRNA upstream 87349 29765682 ~ 29768627 (+) True LOC110486333
XM_021557752.2 mRNA upstream 158290 29685855 ~ 29697686 (+) False LOC110486279
XM_021557744.2 mRNA upstream 158290 29685868 ~ 29697686 (+) False LOC110486279
XM_021557732.2 mRNA upstream 170826 29679207 ~ 29685150 (+) True LOC110486269
XM_021558068.2 mRNA downstream 145829 30078648 ~ 30083392 (+) False LOC110486448
XM_021558076.2 mRNA downstream 145829 30078648 ~ 30083392 (+) True LOC110486448
XR_002468074.2 mRNA downstream 164352 30097171 ~ 30103693 (+) False LOC110486462
XR_005036193.1 mRNA downstream 164352 30097171 ~ 30103693 (+) False LOC110486462
XM_036944998.1 mRNA downstream 164891 30097710 ~ 30103693 (+) True LOC110486462
TU150298 other upstream 66145 29789576 ~ 29789831 (+) True G130414
TU150246 other upstream 162125 29685967 ~ 29693851 (+) True LOC110486279
TU150186 other upstream 214880 29600026 ~ 29641096 (+) True G130308
TU148912 other upstream 370846 29484633 ~ 29485130 (+) True G129155
TU148818 other upstream 377846 29477617 ~ 29478130 (+) True LOC110534631
TU151478 other downstream 767363 30700182 ~ 30700623 (+) True G131491
TU151514 other downstream 815236 30748055 ~ 30749954 (+) True G131517
TU151868 other downstream 1358651 31291470 ~ 31293034 (+) False LOC110534710
TU151908 other downstream 1427617 31360436 ~ 31363213 (+) False eaf1
TU151909 other downstream 1427617 31360436 ~ 31366322 (+) True eaf1

Expression Profile