RNA id: TU150961


Basic Information

Item Value
RNA id TU150961
length 257
lncRNA type read_through
GC content 0.47
exon number 2
gene id G131026
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 30049251 ~ 30070740 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggaacagtgggttaactaccttgctcgggcagaacgacagatttttaccttgtcagctcgggcttagtgggacaatcatttgtttttcaacaggacaatgacccaacacacctccaggctgtgtaagggctatttgaccaagaaggacagtgatggagtgctacttcagatgacctggcctccacaatcacccaacctcaacccaattgagatggtttggaatgagttggactatAGAGTAAAGGAAAAACAgccaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU150931 lncRNA downstream 4625 30041545 ~ 30044626 (-) True G130996
TU150939 lncRNA downstream 53644 29995336 ~ 29995607 (-) True G131004
TU150937 lncRNA downstream 57622 29991396 ~ 29991629 (-) True G131002
TU150592 lncRNA downstream 254671 29794352 ~ 29794580 (-) True G130675
TU150591 lncRNA downstream 256072 29792801 ~ 29793179 (-) True G130674
TU150971 lncRNA upstream 3750 30074490 ~ 30075388 (-) True G131035
TU150973 lncRNA upstream 7103 30077843 ~ 30078431 (-) True G131037
TU150972 lncRNA upstream 8894 30079634 ~ 30080205 (-) True G131036
TU151065 lncRNA upstream 131148 30201888 ~ 30202381 (-) True G131119
TU151073 lncRNA upstream 134174 30204914 ~ 30205524 (-) True G131120
XM_021558025.2 mRNA downstream 7757 29995917 ~ 30041494 (-) True LOC110486409
XM_021558010.2 mRNA downstream 7758 29995917 ~ 30041493 (-) False LOC110486409
XM_021558001.2 mRNA downstream 7759 29995917 ~ 30041492 (-) False LOC110486409
XM_021558018.2 mRNA downstream 7760 29995917 ~ 30041491 (-) False LOC110486409
XM_036944937.1 mRNA downstream 63155 29960662 ~ 29986096 (-) True LOC110534642
XM_021558173.2 mRNA upstream 153846 30224586 ~ 30228415 (-) False tmem79b
XM_021558156.2 mRNA upstream 153846 30224586 ~ 30228599 (-) False tmem79b
XM_036945159.1 mRNA upstream 153846 30224586 ~ 30228599 (-) False tmem79b
XM_021558164.2 mRNA upstream 153846 30224586 ~ 30249645 (-) False tmem79b
XM_021558182.2 mRNA upstream 153846 30224586 ~ 30249645 (-) False tmem79b
TU150630 other downstream 170683 29869046 ~ 29878568 (-) True LOC110486376
TU149442 other downstream 1571420 28477186 ~ 28477831 (-) True LOC110534614
TU149362 other downstream 1738519 28310319 ~ 28310732 (-) False G129582
TU149117 other downstream 1899265 28096682 ~ 28149986 (-) True LOC110485663
TU149009 other downstream 2282719 27766157 ~ 27766532 (-) True G129250
TU151687 other upstream 818953 30889693 ~ 30895983 (-) True c2h8orf37
TU151689 other upstream 826286 30897026 ~ 30899564 (-) True trnae-cuc
TU152152 other upstream 1121679 31192419 ~ 31195186 (-) False LOC110486852
TU152139 other upstream 1121726 31192466 ~ 31195186 (-) False LOC110486852
TU152142 other upstream 1121726 31192466 ~ 31196292 (-) False LOC110486852

Expression Profile