RNA id: TU150834


Basic Information

Item Value
RNA id TU150834
length 324
lncRNA type intronic
GC content 0.49
exon number 1
gene id G130906
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 30229415 ~ 30229738 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tggcttggttgggttgtgtatcggaggatgcatgactttcgaccttcgtctctcccgagcccgtacgggagttgtagcgatgagacaagatagtagctactaacaattggataccacgaaattgggaagaaaagggggtaaaattcccCCCCCCAGCCACTTTGTAATTAAttgtaattcatctgatcactcttcataacattctggagtatatgcaacttgccatcatacaaactgaggcagcagactttgtgaaaactaatatttgtcattctcaaaacttttggccatgactgtacataccccaaccagaagccataggtt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU150730 lncRNA upstream 19685 30206058 ~ 30209730 (+) True LOC110534650
TU150806 lncRNA upstream 72575 30155296 ~ 30156840 (+) True G130879
TU150697 lncRNA upstream 235275 29993917 ~ 29994140 (+) True G130773
TU150351 lncRNA upstream 317482 29907605 ~ 29911933 (+) True LOC110486403
TU150380 lncRNA upstream 329236 29892273 ~ 29900179 (+) True G130479
TU150835 lncRNA downstream 700 30230438 ~ 30230681 (+) True G130907
TU150849 lncRNA downstream 24745 30254483 ~ 30254722 (+) True G130921
TU150718 lncRNA downstream 83509 30313247 ~ 30313950 (+) True G130793
TU150880 lncRNA downstream 96194 30325932 ~ 30326157 (+) True G130950
TU150877 lncRNA downstream 134642 30364380 ~ 30364733 (+) True G130947
XM_021558124.2 mRNA upstream 14588 30210483 ~ 30214827 (+) True LOC110486492
XR_005039484.1 mRNA upstream 15002 30214278 ~ 30214413 (+) True LOC118944173
LOC110534650 mRNA upstream 19618 30205700 ~ 30209797 (+) False LOC110534650
XM_036945049.1 mRNA upstream 23861 30179985 ~ 30205554 (+) False gon4l
XM_021558196.2 mRNA downstream 4782 30234520 ~ 30249314 (+) True LOC110486525
XM_021558216.2 mRNA downstream 31735 30261473 ~ 30311269 (+) False LOC110486531
XM_036945210.1 mRNA downstream 32781 30262519 ~ 30311269 (+) False LOC110486531
XM_036945218.1 mRNA downstream 32781 30262519 ~ 30311269 (+) False LOC110486531
XM_036945204.1 mRNA downstream 39159 30268897 ~ 30311269 (+) True LOC110486531
TU150298 other upstream 439584 29789576 ~ 29789831 (+) True G130414
TU150246 other upstream 535564 29685967 ~ 29693851 (+) True LOC110486279
TU150186 other upstream 588319 29600026 ~ 29641096 (+) True G130308
TU148912 other upstream 744285 29484633 ~ 29485130 (+) True G129155
TU148818 other upstream 751285 29477617 ~ 29478130 (+) True LOC110534631
TU151478 other downstream 470444 30700182 ~ 30700623 (+) True G131491
TU151514 other downstream 518317 30748055 ~ 30749954 (+) True G131517
TU151868 other downstream 1061732 31291470 ~ 31293034 (+) False LOC110534710
TU151908 other downstream 1130698 31360436 ~ 31363213 (+) False eaf1
TU151909 other downstream 1130698 31360436 ~ 31366322 (+) True eaf1

Expression Profile