RNA id: TU150724


Basic Information

Item Value
RNA id TU150724
length 3472
lncRNA type antisense_over
GC content 0.42
exon number 2
gene id G130799
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 30394189 ~ 30397680 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctgtttattatctatatctactgtatgtttatttatatatgtatCTATATATTTACAATGGGAAAACCTTGTTATGAACACATCAGTGTTCTCCAAGCTTATCGCTACAGTGCAGAAGTTACCACTGCGCCATATTGGCTGAGGAGCCCTGTGAAAGATGGCAGTGTTTTCTTTATAGATGAATGCACTTCGATTTACTGTAAGGCAAGGCAGTGAACAGAGTATTTGCTTTGGCAAGATCCAAAGTTTTTCTGTACATTTTTTCTGTTGCTGTGTAAATTCTTACAAGAAACATTATTTCTACATGAGCTCTCACTGTTATTGCAGTCAAACTAACTCGTAACACTGTAATTGTTCTGCATGAAAATAGTTTTTTAATCAACTCTATGAAACAGACTTGTGTTGTCTGGTAAACACAGTGAAGCACATAAATAATAGTTTGATTCTCGTTCTAAACAGTGAGAGGATAACAAAGAAGAAAGCACTGTATAATTATATTAATACAGGACATGTTTTTTCTGTCACTAGCTCTGAATAGCAGGAGGAATTTGAAGAGAAAAGCACCATCATCTGTACATTAGTTCAGTTGCATATTTTTTTTCACACTATTTGTCATTAAATGCTATTTTCTGGTTGGAGGcttttcacatttttttttggggggggagagaAACATTTGGTGGAATTAATGTATaatctctgtcacgccctgaccttagagagcctttttatttctctttttggttaggtcggggtgtgatttgggtgggcattctagtttttctatttctttgttggccgggtatggttcccaatcagaggcagctgtctattgttgtctctgattggggatcatacttaggcagccttgtTTCCCACCTCGTTTATCTTTAGTTTTTTTGGTGTTCATCTAAATAaagatgtacgcttaccatgctgcgccttggtccgatccttcaaaCAACGATCTTCTGTTATGTCCGTTGtttgaaggatcggaccaaggcgcagcatggtaagcgtacatcttTCTTTATTTAGATAAAAACAACAAAAGATAAACGAACGTAAcgttctgcaggctacacagtaactgcacaaaaacaagatcccacaactgaaggtgggaaaaagggctgcctaagtatgatccccaatcagagacaacaaaccatactaggccaacaaagaaagTCACAGGGCgtgacaatctctctctctctctctctgaatttcCTCACgtaaggaaagggggatacctaggtTGGGTTAAaggcagaagacacatttcagttgaaggtgTTCAGTTGTTCAACTGGTAGTGGCACCCCTTCAGCTGATGTTAAATAGGAGCATTACGTATTCTCATGTCAGTGCCCTATCATCAAATAAGCATTTAATGTTTTAACAGACTGGttcttgtgtaaaaaaaaaaacaactttagAACATTTTATTAAACTGGAAAATGGACTAAATTCTTTCATCATGGGTGGTTGATTATTGTAAAGATTCACAGGGAATGATATGTACATGTTTGCACATGTCTGTGTACATTTCTGCGTgtttgtgagtgtctgtgtgtgagagagtgtgcttCAACATTagagtatgtctctgtctctttctccatccccctTCCTCCTTCAGTTGACATTGATGCCCTCGTCCAGCTGGTCTGAGCGGGCAATAAGTGTGTTGAGCATCATCTGCACATGCTCCGCCCTCATCTTGCTGATCTCCAGGACCTCCTCATGGTTCACCTTCTCCTCACGGCTGTAGTCCAGGGAGACCTTCACAATGATAATAAGAATACATTAAGATGCTCCGGTACCATACTCAATAACTAGTCAACAGATGACAGAATAGATACGCTGAGCTGTTCAGAGTGTGTGCAGATAAGGTACATCAAATGATATACAGCAATAAGAGAAGTCAATCAATACCTTGTTGGTGATGAGTGAGAGACCAAAGACCCTCAGGCCACAGTGCTTGGCCACTGTTACCTCTGGGACCGTACTCATGCCTATCGAGAAGAGGATAGGGGTTGGGGAGTGCAGACGAGGACAGGAGCGGAGGTTGGCAGGTTCATGGGGATGGAAAgcgagaggggtggggggggcagaGAAAAAATGGCAAAATATCCAACAGGGTTTGTGGGTGGCACCAGGTcatggttgtgtgtttgtgtgtgtgtagagaggtggTTATACTATTCAGCATTATTAATAACCCCCTCCGTGCACTTCCCCCTGAACTTTGGTCCCGTTCCCTGAGATTAGGTCCCATTCCCTGAGATTAGGTCCCATTCCCTGAGATTAGGTCCCATTCCCTGAGATTAGGTCCCATTCCATGAGATTAGGTCCCATTCCATGAGATTAGGTCCCATTCCCATGTTAGTATTTAATGGGAGCCCAGCCAGATCTCACATATCATTAAAACCATGCTAAAAACATGGATACAATTTACACAGGCACATACTGTACGAATGCAACGACAAAACAATGTTTACAGGCATAACCAAAAAGCATATGAATTAAAAATACTTATTAAGCCAAAGGtctcactcactcaaacacagCCTCCACTAAGCTGAAACTCTAGCATGGTAAAGAAAAAACACCACATAAAAAAATATGGATTGGCAGACGTGAATTGGACTCATTAAATAATACACCCACAGGAGTAATAACTCAAAACGTCATCAAAACAAGGAACCAAAGCGGGTTTTCTTTGTCATTGCTTGGCTACAACAACAAGCTCTTAAGGTAACAAGTCGGTAAAATACATGTTCTTAGGGGGAGTGGATCATGAAAGATGTCATTCGTTAGTTCTGCCCACTGTACATTGTAACAGATATTTGTGTTGCATTTTGATCCTGGATCAAATCATCAGACCAATTAGCGTCACAGCATGTTGGTCTATCTGTTGACCTAATCGCTAGGCTAATTAGCATGAGTCGGCTCTGTTAGCAGAGCTAGCACCATCATTTATTAACGAGCCCAGCATGGGTGTTTTTACGAGGGAGGTCCAATTAGAGCAGTGTTAATGAACTAAAAAGGGGAAAAGGAGAGTGAGCAAGCCTCGTCTGTGTTTGTATCGTTGTTAAACCATGTTGTGGCTGGTGGTCACTTGGCTCTCTGACAAAACATCCCCTTCCTGAGTAGATGCTTGATCTTGATACAGCATTTTGAAACACAAGTTGTATTAAATATCTAGCTATTGTTCCTTTAAACTTAAATTGAACCATTTCCTAACATTAACTGTGTTGTCTCCACTCACCCACAGAGTCGCACCCCAAGACCTGCAACATGCGTGCCTCAGCGATGGTCTCGAAGTTGGGCCCGCTCACCATGCAGTACACCCCTTCCCGCACAAAGTTGGTATAGTCCAGCTCATGACTGATATCTAGAGCTAGCTTCCTCAGGTCCTTACTGTAGGCATCTGACATGCAGGGGAACCGGATCCCAAACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU150877 lncRNA upstream 29456 30364380 ~ 30364733 (+) True G130947
TU150880 lncRNA upstream 68032 30325932 ~ 30326157 (+) True G130950
TU150718 lncRNA upstream 80239 30313247 ~ 30313950 (+) True G130793
TU150849 lncRNA upstream 139467 30254483 ~ 30254722 (+) True G130921
TU150835 lncRNA upstream 163508 30230438 ~ 30230681 (+) True G130907
TU150918 lncRNA downstream 31548 30429228 ~ 30429516 (+) True G130988
TU150923 lncRNA downstream 42252 30439932 ~ 30440195 (+) True G130993
TU151230 lncRNA downstream 57550 30455230 ~ 30455459 (+) True G131262
TU151234 lncRNA downstream 61049 30458729 ~ 30458957 (+) True G131266
TU151244 lncRNA downstream 73479 30471159 ~ 30471613 (+) True G131276
XM_021558303.2 mRNA upstream 34494 30352768 ~ 30359695 (+) False decr1
XM_021558313.2 mRNA upstream 34494 30352944 ~ 30359695 (+) True decr1
XM_036945278.1 mRNA upstream 44219 30326491 ~ 30349970 (+) False LOC110486570
XM_036945475.1 mRNA downstream 87692 30485372 ~ 30505119 (+) False LOC110534660
XM_021558399.2 mRNA downstream 120763 30518443 ~ 30530345 (+) False LOC110486625
XM_021558415.2 mRNA downstream 120763 30518443 ~ 30530345 (+) False LOC110486625
XM_021558425.2 mRNA downstream 120763 30518443 ~ 30530345 (+) False LOC110486625
XM_021558375.2 mRNA downstream 121216 30518896 ~ 30530345 (+) False LOC110486625
TU150298 other upstream 604358 29789576 ~ 29789831 (+) True G130414
TU150246 other upstream 700338 29685967 ~ 29693851 (+) True LOC110486279
TU150186 other upstream 753093 29600026 ~ 29641096 (+) True G130308
TU148912 other upstream 909059 29484633 ~ 29485130 (+) True G129155
TU148818 other upstream 916059 29477617 ~ 29478130 (+) True LOC110534631
TU151478 other downstream 302502 30700182 ~ 30700623 (+) True G131491
TU151514 other downstream 350375 30748055 ~ 30749954 (+) True G131517
TU151868 other downstream 893790 31291470 ~ 31293034 (+) False LOC110534710
TU151908 other downstream 962756 31360436 ~ 31363213 (+) False eaf1
TU151909 other downstream 962756 31360436 ~ 31366322 (+) True eaf1

Expression Profile