RNA id: TU151214


Basic Information

Item Value
RNA id TU151214
length 1171
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G131246
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 30439053 ~ 30440223 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtccgtagaattttggacatgcgtcctcggggccgtggtcaccagtacctcgtggattgggaggggtacggtcctgaggagaggagttgggttccctctcgggacgtgctggaccgtgcgctgatcgaggatttcctccgttgccgccaggtttcctcctcgagtgcgccaggaggcgctcggtgagtgggggggtactgtcatgtactgtcatgttgtgtcttgtctctgtcctttcccttcaccctgtctccctctgctggtcgttgttaggttacctttccaccccctcttttccccagctgtgccttgtctcctcctaaccacctcgtcaccccttttcccacctgttccctttttccctctgattagtcccctatatctctctctgtttttgttcctgtccttgtcggattcttgtttgttgtgtttcatgcctgaaccagactgtcgtcatgtttgctgtaaccttgtcttgtcctgtcggaatctgccggtccgtctgagcctacctatgtttggtaattaaagaagctctgtttaagttaattcgcttttgggtcctcattcacgcaccgtaacagtaaaaccttgaaatcagcccttgccttaacaggaagccagtgtagtgggcttgctcctaccaactttccgatttggtcctgccatacatacgtatgctatggtcacaagacgctagcactggagtaatttgatcaaatgttttggttctagtcaagattctagcagccgtgtttagcaccaactgaagtttatttagtgctttatccgggtagtcggaaagtagagcattacagtagtctaacctagaagtgacaaaagcatggaataatttttctgcatcatttttggacagaaagtcaatgatttttgcaatgttacgtagatggaaaaaagctgtccttgaaacagtcttgatatgttcgtcaaaagagagatcagggtccagagtaactccgacatccttcacagttttatttgagatgactgtacaaagATCATTTGTTTCTtcggacctagaacaagcatctctgttttgtccgagtttaaaagtagaataatTGCAGCcacccacttccttatgtctgaaacacaggcttccagggagggcaattttggggcttcaccatgtttcatcgaaatgtacagc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU151209 lncRNA downstream 4211 30434612 ~ 30434842 (-) True G131241
TU151207 lncRNA downstream 5547 30433278 ~ 30433506 (-) True G131239
TU151204 lncRNA downstream 11026 30427757 ~ 30428027 (-) True G131236
TU151203 lncRNA downstream 12829 30425776 ~ 30426224 (-) True G131235
TU151115 lncRNA downstream 45638 30392627 ~ 30393415 (-) True G131161
TU151224 lncRNA upstream 10868 30451091 ~ 30451453 (-) True G131256
TU151317 lncRNA upstream 31278 30471501 ~ 30471819 (-) True G131341
TU151323 lncRNA upstream 44568 30484791 ~ 30485262 (-) True G131347
TU151324 lncRNA upstream 45129 30485352 ~ 30486009 (-) True G131348
TU151327 lncRNA upstream 51606 30491829 ~ 30491932 (-) True G131351
XM_021558337.2 mRNA downstream 25280 30394852 ~ 30413773 (-) True pnp4b
XM_021558325.2 mRNA downstream 56112 30364891 ~ 30382941 (-) True calb1
XR_005036221.1 mRNA downstream 86724 30348834 ~ 30352329 (-) True LOC110486577
XM_021558182.2 mRNA downstream 189408 30224586 ~ 30249645 (-) False tmem79b
XM_036945348.1 mRNA upstream 40781 30481004 ~ 30484360 (-) True LOC110486614
XM_036945424.1 mRNA upstream 63402 30503625 ~ 30509152 (-) True aldh5a1
XM_036945444.1 mRNA upstream 69635 30509858 ~ 30517631 (-) False LOC110486664
XM_021558436.2 mRNA upstream 69635 30509858 ~ 30517733 (-) False LOC110486664
XM_021558444.2 mRNA upstream 69635 30509858 ~ 30517736 (-) False LOC110486664
TU150630 other downstream 560485 29869046 ~ 29878568 (-) True LOC110486376
TU149442 other downstream 1961222 28477186 ~ 28477831 (-) True LOC110534614
TU149362 other downstream 2128321 28310319 ~ 28310732 (-) False G129582
TU149117 other downstream 2289067 28096682 ~ 28149986 (-) True LOC110485663
TU149009 other downstream 2672521 27766157 ~ 27766532 (-) True G129250
TU151687 other upstream 449470 30889693 ~ 30895983 (-) True c2h8orf37
TU151689 other upstream 456803 30897026 ~ 30899564 (-) True trnae-cuc
TU152152 other upstream 752196 31192419 ~ 31195186 (-) False LOC110486852
TU152139 other upstream 752243 31192466 ~ 31195186 (-) False LOC110486852
TU152142 other upstream 752243 31192466 ~ 31196292 (-) False LOC110486852

Expression Profile