RNA id: TCONS_00028241


Basic Information

Item Value
RNA id TCONS_00028241
length 888
lncRNA type intronic
GC content 0.37
exon number 5
gene id XLOC_014196
representative False

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 36625129 ~ 36627634 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCATTTTGTAATGGCTGCTGATCACTATTCCAGAAAGGTCAAAGCAAGGCCAACCAGGATGAGATGAAAATGTGTATCAAGAATTCAACCATATAGTTAGTAAGAATTATATTGGTCTCTTGATCATCACTGCCCACAGCTGATTCAGATCTTCTGGTCACAGAGAGGTCTCACTGGACAGATTTCTATCTTCTACAAGCTGTCAAGGCCTCTGACCTTACTGACATGCGATGTGTTGTCATTTGAGTGCTTCCAGTAGTTCTGATGACCCAACAGTTCTTCAAAGCATGTTTTGCTTCAGATGATGGAGACTCAAATCAACATGTGCCCGTTGGAATTCTTAACCGAGAAAATTACGATGTGGCTCTGCAACCCGTCCTTCCACCTCCACCCATCCTCTGTGGGAATCATCTTGGAGGAAAATGTTGTAATGGACAATATAGACAATATACCCCAGGCCATGTGTCTTTTTGGATCAACCTATGCACAGCACCTAGGCTACACAAAATGCAAGGACAATACCCttctttttattcaacaagtTTGGGTAAGAAGACGCTGAAGGGTAAGATTCTGGCTTGTCATGTAAACTGGTACAAAAAAGGCATGTTCCTTCAGGCTTGCTGTCCTAActgtgagttaaaaaaaacttaaaactatgCCTTAGTGTTTGGCAAGTGTAAATATTCCATAATGTTACAATGTAATAATATCTTGTGGTTGTTTATtatttggatatgtttgtaaaaatgtatttaaatattttaaacaagtgttttaataagatttataacaataaatattaacaatCTGTTATACAAGGCATTTTCTTGTTTTGTCACTTGTTTCGGAGTGATAtttctaaatgattttaaatcaagTGTAAAG

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0022607 cellular component assembly biological_process
GO:0001732 formation of cytoplasmic translation initiation complex biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0065003 protein-containing complex assembly biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0006413 translational initiation biological_process
GO:0043933 protein-containing complex subunit organization biological_process
GO:0006518 peptide metabolic process biological_process
GO:0034622 cellular protein-containing complex assembly biological_process
GO:0002181 cytoplasmic translation biological_process
GO:0002183 cytoplasmic translational initiation biological_process
GO:1990904 ribonucleoprotein complex cellular_component
GO:0005832 chaperonin-containing T-complex cellular_component
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0101031 chaperone complex cellular_component
GO:1905368 peptidase complex cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0005685 U1 snRNP cellular_component
GO:0070993 translation preinitiation complex cellular_component
GO:0008135 translation factor activity, RNA binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0031369 translation initiation factor binding molecular_function
GO:0003743 translation initiation factor activity molecular_function
GO:0051082 unfolded protein binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00030006 lncRNA upstream 45437 36578914 ~ 36579838 (+) True XLOC_014195
TCONS_00030005 lncRNA upstream 509434 36110942 ~ 36115841 (+) True XLOC_014192
TCONS_00030004 lncRNA upstream 643984 35975603 ~ 35981291 (+) True XLOC_014191
TCONS_00030003 lncRNA upstream 690500 35863271 ~ 35934775 (+) False XLOC_014191
TCONS_00029727 lncRNA upstream 690947 35863271 ~ 35934328 (+) False XLOC_014191
TCONS_00030008 lncRNA downstream 866685 37494319 ~ 37498679 (+) True XLOC_014202
TCONS_00030009 lncRNA downstream 942027 37569661 ~ 37570676 (+) True XLOC_014204
TCONS_00029728 lncRNA downstream 1310173 37937807 ~ 37948286 (+) True XLOC_014208
TCONS_00030010 lncRNA downstream 1389965 38017599 ~ 38020095 (+) True XLOC_014209
TCONS_00030011 lncRNA downstream 1750765 38378399 ~ 38384624 (+) True XLOC_014212
TCONS_00028238 mRNA upstream 772885 35799384 ~ 35852390 (+) True XLOC_014190
TCONS_00028234 mRNA upstream 1608228 35013129 ~ 35017047 (+) False XLOC_014184
TCONS_00028235 mRNA upstream 1608980 35013212 ~ 35016295 (+) True XLOC_014184
TCONS_00028233 mRNA upstream 1620328 35002479 ~ 35004947 (+) True XLOC_014183
TCONS_00028232 mRNA upstream 1667387 34952582 ~ 34957888 (+) True XLOC_014182
TCONS_00028244 mRNA downstream 490913 37118547 ~ 37119891 (+) True XLOC_014198
TCONS_00028245 mRNA downstream 492857 37120491 ~ 37134211 (+) True XLOC_014199
TCONS_00028246 mRNA downstream 508066 37135700 ~ 37139452 (+) True XLOC_014200
TCONS_00028247 mRNA downstream 830976 37458610 ~ 37492517 (+) True XLOC_014201
TCONS_00028248 mRNA downstream 882004 37509638 ~ 37519610 (+) True XLOC_014203
TCONS_00028240 other upstream 382367 36242791 ~ 36242908 (+) True XLOC_014194
TCONS_00028239 other upstream 422080 36203078 ~ 36203195 (+) True XLOC_014193
TCONS_00028237 other upstream 846318 35778842 ~ 35778957 (+) True XLOC_014189
TCONS_00028229 other upstream 1878542 34742706 ~ 34746733 (+) False XLOC_014179
TCONS_00028225 other upstream 2417995 34207162 ~ 34207280 (+) True XLOC_014173
TCONS_00028243 other downstream 52457 36680091 ~ 36680207 (+) True XLOC_014197
TCONS_00028250 other downstream 1042026 37669660 ~ 37669774 (+) True XLOC_014206
TCONS_00028259 other downstream 1628642 38256276 ~ 38256392 (+) True XLOC_014211
TCONS_00028260 other downstream 1794425 38422059 ~ 38426683 (+) False XLOC_014213
TCONS_00028262 other downstream 1836497 38464131 ~ 38466651 (+) True XLOC_014213

Expression Profile

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