RNA id: TU151635



Basic Information


Item Value
RNA id TU151635
length 578
lncRNA type antisense_over
GC content 0.51
exon number 1
gene id G131630
representative True

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 30730724 ~ 30731301 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GTGGATGGTCATTCACATCTGATACCATGATGGTAGCCGTTCCAGTCCCAGACAAGCCCCCACCATCCCTGGCCTCAACCACAACCAGATAGCGGTCCTCCGCCTCACGGTCCAGAGACCGTAGAACTGTACTGATGGTTCCAGTTGAAGGGTTGATGGAGAACAGATTGAGGTTGATCTCGTTGCGAACGTTTTGTACGATGCGGTAGGTCAGTATGGCGTTCTTCCCGGCCTTGGGGTCATCTAAATCCGTGGCCCTTATCTCCATCACTGAGGTGTCGGCGGGAGAGTTCTCAGGCACGTGGCCAACAAAGCAGCCTGAAGAGTCCGGCGCCGGACATGGGAAGACTGGTGCGTTGTCGTTGATGTCATGAACTTCCAAAAGGACGTCAGCAAAGCCAGTGAGTCCCGCCCCTCCCTCATCGGTGGCCAGAACCAGGAAACGCCAGGCCGGGCGCTCCTCACGGTCCAGACGGCGTTGGGCATAGATGCGACCCGTACTCTCATCGATGGTGAACTCACTGCCGGCTCCCTGGCCGTGGAGTGAGTAGCGCAGGGCGCTCTGGTCTGCCTCCTGG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU151634 lncRNA downstream 1077 30729432 ~ 30729647 (-) True G131629
TU151633 lncRNA downstream 1750 30728577 ~ 30728974 (-) True G131628
TU151625 lncRNA downstream 10734 30719750 ~ 30719990 (-) True G131620
TU151624 lncRNA downstream 11014 30719394 ~ 30719710 (-) True G131619
TU151622 lncRNA downstream 14686 30715819 ~ 30716038 (-) True G131617
TU151677 lncRNA upstream 79023 30810324 ~ 30810727 (-) True G131661
TU151683 lncRNA upstream 83372 30814673 ~ 30815862 (-) False G131663
TU151680 lncRNA upstream 83462 30814763 ~ 30815862 (-) True G131663
TU151740 lncRNA upstream 184037 30915338 ~ 30918439 (-) True G131712
TU151755 lncRNA upstream 369678 31100979 ~ 31101745 (-) True G131723
XM_021558465.2 mRNA downstream 171764 30557560 ~ 30558960 (-) True gbp
XM_036945463.1 mRNA downstream 212697 30509860 ~ 30518027 (-) True LOC110486664
XM_036945453.1 mRNA downstream 212930 30509858 ~ 30517794 (-) False LOC110486664
XM_021558444.2 mRNA downstream 212988 30509858 ~ 30517736 (-) False LOC110486664
XM_021558436.2 mRNA downstream 212991 30509858 ~ 30517733 (-) False LOC110486664
XM_036945520.1 mRNA upstream 16754 30748055 ~ 30752717 (-) False LOC110486705
XM_021558487.2 mRNA upstream 16754 30748055 ~ 30758543 (-) True LOC110486705
XM_021558542.2 mRNA upstream 29984 30761285 ~ 30773403 (-) True LOC110486727
XM_021558501.2 mRNA upstream 48158 30779459 ~ 30798791 (-) False nagpa
XR_002468099.2 mRNA upstream 48158 30779459 ~ 30798791 (-) False nagpa
TU150630 other downstream 852156 29869046 ~ 29878568 (-) True LOC110486376
TU149442 other downstream 2252893 28477186 ~ 28477831 (-) True LOC110534614
TU149362 other downstream 2419992 28310319 ~ 28310732 (-) False G129582
TU149117 other downstream 2580738 28096682 ~ 28149986 (-) True LOC110485663
TU149009 other downstream 2964192 27766157 ~ 27766532 (-) True G129250
TU151687 other upstream 158392 30889693 ~ 30895983 (-) True c2h8orf37
TU151689 other upstream 165725 30897026 ~ 30899564 (-) True trnae-cuc
TU152152 other upstream 461118 31192419 ~ 31195186 (-) False LOC110486852
TU152139 other upstream 461165 31192466 ~ 31195186 (-) False LOC110486852
TU152142 other upstream 461165 31192466 ~ 31196292 (-) False LOC110486852

Expression Profile