RNA id: TU151538


Basic Information

Item Value
RNA id TU151538
length 539
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G131540
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 30860556 ~ 30861094 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttgagaccgtgtctgtgccttgacctaggttgggcaaaactaaacatggcggtgtttgccttagcaatctcactaggataaagacctcctccattcctgtcattattgaaagagatcatgatacctcacatctcaaaatagggctacttaatgttagatcccttacttcaaaggcaattatagtcaatgaactaatcactgatcataatcttgatgtgattggcctgactgaaacatggcttaagcctgatgaatttactgtgttaaatgaggcctcacctcctggctacactagtgaccatatcccccgtgcatcccgcaaaggcggaggtgttgctaacatttacgatagcaaattgcaatttacaaaaaaaaaatgcttttttcGTCTTTTGatcttctagtcatgaaatctatgcagcctactcaatcactttttatagctactgtttacaggcctcctgggccatatacagcgttcctcattgagttccctgaattcctatcggaccttgtagtcatagcagataatattctaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU151525 lncRNA upstream 45223 30814506 ~ 30815333 (+) True G131527
TU151493 lncRNA upstream 98642 30747628 ~ 30761914 (+) True G131502
TU151481 lncRNA upstream 150835 30709496 ~ 30709721 (+) True G131494
TU151480 lncRNA upstream 151072 30708874 ~ 30709484 (+) True G131493
TU151430 lncRNA upstream 249636 30610691 ~ 30610920 (+) True G131448
TU151557 lncRNA downstream 41710 30902804 ~ 30908231 (+) True G131556
TU151751 lncRNA downstream 194966 31056060 ~ 31056286 (+) True G131719
TU151752 lncRNA downstream 238106 31099200 ~ 31099445 (+) True G131720
TU151753 lncRNA downstream 239654 31100748 ~ 31100965 (+) True G131721
TU151765 lncRNA downstream 245747 31106841 ~ 31175978 (+) True G131731
XM_021619612.2 mRNA upstream 4510 30851297 ~ 30856046 (+) True LOC110534679
XM_036945578.1 mRNA upstream 16257 30821776 ~ 30844299 (+) False plekhf2
XM_021558562.2 mRNA upstream 16257 30821872 ~ 30844299 (+) False plekhf2
XM_036945579.1 mRNA upstream 16257 30822451 ~ 30844299 (+) False plekhf2
XM_036945557.1 mRNA upstream 16257 30824421 ~ 30844299 (+) False plekhf2
XM_036945585.1 mRNA downstream 12639 30873733 ~ 30891386 (+) False LOC110534689
XM_036945587.1 mRNA downstream 12639 30873733 ~ 30891386 (+) True LOC110534689
XM_036945604.1 mRNA downstream 275714 31136808 ~ 31146454 (+) False LOC110486784
XM_036945598.1 mRNA downstream 275716 31136810 ~ 31146454 (+) True LOC110486784
XM_036933421.1 mRNA downstream 338241 31199335 ~ 31202392 (+) False sri
TU151514 other upstream 110602 30748055 ~ 30749954 (+) True G131517
TU151478 other upstream 159933 30700182 ~ 30700623 (+) True G131491
TU150298 other upstream 1070725 29789576 ~ 29789831 (+) True G130414
TU150246 other upstream 1166705 29685967 ~ 29693851 (+) True LOC110486279
TU150186 other upstream 1219460 29600026 ~ 29641096 (+) True G130308
TU151868 other downstream 430376 31291470 ~ 31293034 (+) False LOC110534710
TU151908 other downstream 499342 31360436 ~ 31363213 (+) False eaf1
TU151909 other downstream 499342 31360436 ~ 31366322 (+) True eaf1
TU152486 other downstream 996554 31857648 ~ 31887572 (+) False G132342
TU152482 other downstream 996592 31857686 ~ 31883073 (+) True G132342

Expression Profile