RNA id: TU151753


Basic Information

Item Value
RNA id TU151753
length 218
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G131721
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 31100748 ~ 31100965 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cagaattatctgtactatccgacaggatgctctcgattgtgcagttgtaaaagtttgtgagtgtttttggtgacaagccaaatttcttcagcctcctgaggttgaaaaggcgctgctgcgccttcttcaccacgctgtgtgtctgtgtgggtggaccatttcagtttgtccgtgatgtgtacgccgaggaactttccaccttctccactactgtcccg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU151752 lncRNA upstream 1303 31099200 ~ 31099445 (+) True G131720
TU151751 lncRNA upstream 44462 31056060 ~ 31056286 (+) True G131719
TU151557 lncRNA upstream 192517 30902804 ~ 30908231 (+) True G131556
TU151538 lncRNA upstream 239654 30860556 ~ 30861094 (+) True G131540
TU151525 lncRNA upstream 285415 30814506 ~ 30815333 (+) True G131527
TU151765 lncRNA downstream 5876 31106841 ~ 31175978 (+) True G131731
TU151776 lncRNA downstream 15177 31116142 ~ 31124644 (+) True G131742
TU151810 lncRNA downstream 87043 31188008 ~ 31188315 (+) True G131773
TU151819 lncRNA downstream 94413 31195378 ~ 31195723 (+) True G131777
TU151824 lncRNA downstream 107011 31207976 ~ 31208235 (+) True G131782
XM_036945585.1 mRNA upstream 209362 30873733 ~ 30891386 (+) False LOC110534689
XM_036945587.1 mRNA upstream 209362 30873733 ~ 30891386 (+) True LOC110534689
XM_021619612.2 mRNA upstream 244702 30851297 ~ 30856046 (+) True LOC110534679
XM_036945569.1 mRNA upstream 256449 30828239 ~ 30844299 (+) False plekhf2
XM_036945604.1 mRNA downstream 35843 31136808 ~ 31146454 (+) False LOC110486784
XM_036945598.1 mRNA downstream 35845 31136810 ~ 31146454 (+) True LOC110486784
XM_036933421.1 mRNA downstream 98370 31199335 ~ 31202392 (+) False sri
XM_021617743.2 mRNA downstream 98481 31199446 ~ 31202392 (+) False sri
NM_001165117.2 mRNA downstream 98561 31199526 ~ 31202385 (+) True sri
TU151514 other upstream 350794 30748055 ~ 30749954 (+) True G131517
TU151478 other upstream 400125 30700182 ~ 30700623 (+) True G131491
TU150298 other upstream 1310917 29789576 ~ 29789831 (+) True G130414
TU150246 other upstream 1406897 29685967 ~ 29693851 (+) True LOC110486279
TU150186 other upstream 1459652 29600026 ~ 29641096 (+) True G130308
TU151868 other downstream 190505 31291470 ~ 31293034 (+) False LOC110534710
TU151908 other downstream 259471 31360436 ~ 31363213 (+) False eaf1
TU151909 other downstream 259471 31360436 ~ 31366322 (+) True eaf1
TU152486 other downstream 756683 31857648 ~ 31887572 (+) False G132342
TU152482 other downstream 756721 31857686 ~ 31883073 (+) True G132342

Expression Profile