RNA id: TU152165


Basic Information

Item Value
RNA id TU152165
length 1938
lncRNA type antisense_over
GC content 0.56
exon number 5
gene id G132066
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 31199404 ~ 31202388 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTCCACATATATGGTTGTGTTTATTactctctttcacatacagacAAAATTACTCCCAGCTATATTTAGGGATATATTGATTATCATGATGAATAGTAAAGACTTTCAACAGTGACATAATATACAGAACATGCAGTGGTGACACGGGTTTATAGGCACACCTAGTGGTTAAAGTTGGCAAATATTCCAGTTTCCTAAGGTAATGTTACAATTTTATAGCAACTTCCTATTTCAAAACTTCCTATTTAGTCATGTTTGTATAAAAGCAATCAAAAAATGCAAGCGATTTGTGAGTATCAAAAATACATGTCAGAATTAATTTTTACAcatgctaaattgtaaatattaTGGGAGTTAAGAGGTAGTCCCTCAGATGTTTTTCTGCTCTGTCTCTTCATGTGCTCATCGTGCACTggatgaaATCATCGTATGGAAATGTGGCCATTCCCTGTCCAGCTTGGTCCCGCTTTCGGAACAAATCAGTCAGGGTTCTGAGTTTCACACAACAAGCTACGTAGTCATCAAAGGTGATCTTCCCCTGAGAACTGAATCTCTTGATGATGCAGTTCATGGCTTGTGGGCTCAGTCTGTAGCCtgtaacacacaaacaaacatgtcaAATGAACACATATAAACGAATACACCCTTTGTGCTTGTACGTACCCATGGAAGTGACTGCCTGGTGCATCTCCTGGGGGTCCACGGTCCCACTCTGGTCACGATCAATGGACATGAAGTGCTGCTTCCAGCCATTGAGCACGGTCCACAGCTCCTTGAACTCGTTGAAGCCCATAGTACATGACATGTCTCTCTGAGGGGTCGCTTCAGTCAAGGAACAGGAACAGCAGTGACCTCACAACCTTACCTCAAACATGAATATAGACGGCTAAAGGTTTCCTGAATCATTTCAATATTTAGATGATGTTGTCCTGATATATCTAGTTGTTTTTTCCCCATTCAAGAAAAATCCATGGAACACAGTCATACAATGTGAGAGGACTTTCTGCAAACTCTGAATGCACAAAAAAACTGTCACTTACGCATATTCCATCTCATATTATTGTCCTGGTAGCTAGTAGGGACCATAGTATTTTAAaaatctgtgtgtctgtactgactgGTTAGTCAAGGATACATCCAGCATGTTGATCATCAGTCTGCAGGTCTCCAGGTTAAAAGCTGTCAGAGATAAGATAACAGTTCATCAAACCACAGGCAGCTCTCCATACAATGTAAAGAATAGaataaaacaaaatactgcattgAAAAATGACTGGGAGTTTGCGGTTGCCGTCGGTCTTGTACATGGTGTCACTCTTACGTTTGTAGCCACCAGAGAAGTTAGCCTGTGTGAGGCATTGCTGGAGCTCTTCCGCTGATATGTGCCCATCCTTCCAATGTCAAAACATATAGGGGAAAAAATACTTACTGAGAccaaaacaatgcatttttagaTGACAGTAagctgttttgactgtgttgagACTAGCAGATAGCTCAATATGTCAATCTGTAAGTCTTATTACCTGGCCTGCAACAGCAGCAAAATATCCATAGAGAGGGTCTTGCTGCTGACCAGGGTATCCTCCAAAGCCAGGTCCACCAGGGGGGTGGCCACCAGCAGGGGCACCTCCATactgcgagacagacCCTCCTGGGTATCCGCCTGCGGGAGCACCATATCCAGGATAACTCATTTCTATGAATGAAAAGAATAAGACTGTGAAACCAACTGGCAATAAAGTATCCACTTCCACGACTTGCCCTTCTTGACACACAAGGGGAGTGTCGGCTGTCCTGCTTTACAATAAGCAATGGGAGGGATGAATTTGAGTTCTAAGCTGTTGTCTTTGGGAACCTTTATTTGGAGTAAAAGAGTGGATGTAGTTGAATAGAAGTCAAAGTATAAACTTTTACCAGAGTATGTTTTGCTAAAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU152160 lncRNA downstream 3684 31195366 ~ 31195720 (-) True LOC110486852
TU152095 lncRNA downstream 23984 31151591 ~ 31175420 (-) False G132020
TU152093 lncRNA downstream 23984 31172956 ~ 31175420 (-) True G132020
TU152094 lncRNA downstream 46781 31151591 ~ 31152623 (-) False G132020
TU151755 lncRNA downstream 97659 31100979 ~ 31101745 (-) True G131723
TU152176 lncRNA upstream 22870 31225258 ~ 31225789 (-) True G132075
TU152131 lncRNA upstream 26563 31228951 ~ 31229522 (-) True G132055
TU152129 lncRNA upstream 53526 31255914 ~ 31258119 (-) True G132053
TU152191 lncRNA upstream 66787 31269175 ~ 31269380 (-) True G132090
TU152196 lncRNA upstream 69985 31272373 ~ 31275952 (-) True G132095
XM_036945646.1 mRNA downstream 163 31196917 ~ 31199241 (-) False LOC110486868
XM_021558703.2 mRNA downstream 184 31196917 ~ 31199220 (-) False LOC110486868
XM_021558711.2 mRNA downstream 184 31196917 ~ 31199220 (-) False LOC110486868
XM_036945637.1 mRNA downstream 184 31196917 ~ 31199220 (-) False LOC110486868
XM_036945651.1 mRNA downstream 184 31196917 ~ 31199220 (-) False LOC110486868
XM_036945709.1 mRNA upstream 28965 31231353 ~ 31247745 (-) False herpud2
XM_021558762.2 mRNA upstream 28965 31231353 ~ 31248873 (-) False herpud2
XM_021558766.2 mRNA upstream 28965 31231353 ~ 31248873 (-) True herpud2
XM_036945727.1 mRNA upstream 95745 31298133 ~ 31299847 (-) False pkdc
XM_021558825.2 mRNA upstream 95745 31298133 ~ 31299976 (-) True pkdc
TU152092 other downstream 592 31197073 ~ 31198812 (-) True LOC110486868
TU152142 other downstream 3112 31192466 ~ 31196292 (-) False LOC110486852
TU152144 other downstream 3684 31192466 ~ 31195720 (-) False LOC110486852
TU152152 other downstream 4218 31192419 ~ 31195186 (-) False LOC110486852
TU152139 other downstream 4218 31192466 ~ 31195186 (-) False LOC110486852
TU152311 other upstream 333659 31536047 ~ 31543009 (-) True G132197
TU152378 other upstream 432932 31635320 ~ 31648795 (-) True LOC110486999
TU154326 other upstream 1536441 32738829 ~ 32751578 (-) False LOC110514821
TU154330 other upstream 1536441 32738829 ~ 32751578 (-) False LOC110514821
TU154412 other upstream 1545820 32748208 ~ 32788121 (-) True G134102

Expression Profile