RNA id: TU151824


Basic Information

Item Value
RNA id TU151824
length 260
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G131782
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 31207976 ~ 31208235 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

attgtcccaagcacaaggtgcacctgtgcaatgatcatgtcgtttaatcagcttcttgatatgccacacttgtcaggtggatggattatctcggcaaatgagaaatgctcactaacagggatttaaacacatttgtgcataacatttgagagaaaagctttttgtgtgtatggaacatttcagggatattttatttcagctcatgaaacatgggatgaacactttacatgttgcatttatacttttgttcagtatatatc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU151819 lncRNA upstream 12253 31195378 ~ 31195723 (+) True G131777
TU151810 lncRNA upstream 19661 31188008 ~ 31188315 (+) True G131773
TU151765 lncRNA upstream 31998 31106841 ~ 31175978 (+) True G131731
TU151776 lncRNA upstream 83332 31116142 ~ 31124644 (+) True G131742
TU151753 lncRNA upstream 107011 31100748 ~ 31100965 (+) True G131721
TU151836 lncRNA downstream 19938 31228173 ~ 31228578 (+) True G131794
TU151861 lncRNA downstream 41384 31249619 ~ 31249833 (+) True G131813
TU151863 lncRNA downstream 44023 31252258 ~ 31252469 (+) True G131815
TU151849 lncRNA downstream 47589 31255824 ~ 31257043 (+) False mxtx2
TU151846 lncRNA downstream 52197 31260432 ~ 31261041 (+) True mxtx2
XM_036933421.1 mRNA upstream 5584 31199335 ~ 31202392 (+) False sri
XM_021617743.2 mRNA upstream 5584 31199446 ~ 31202392 (+) False sri
NM_001165117.2 mRNA upstream 5591 31199526 ~ 31202385 (+) True sri
XM_036945604.1 mRNA upstream 61522 31136808 ~ 31146454 (+) False LOC110486784
XM_036945598.1 mRNA upstream 61522 31136810 ~ 31146454 (+) True LOC110486784
XM_021558742.2 mRNA downstream 750 31208985 ~ 31222079 (+) False LOC110486889
XM_021558750.2 mRNA downstream 750 31208985 ~ 31222079 (+) True LOC110486889
XM_036945721.1 mRNA downstream 48282 31256517 ~ 31261130 (+) False mxtx2
XM_021558777.2 mRNA downstream 50727 31258962 ~ 31261130 (+) False mxtx2
XM_036945724.1 mRNA downstream 50729 31258964 ~ 31261130 (+) False mxtx2
TU151514 other upstream 458022 30748055 ~ 30749954 (+) True G131517
TU151478 other upstream 507353 30700182 ~ 30700623 (+) True G131491
TU150298 other upstream 1418145 29789576 ~ 29789831 (+) True G130414
TU150246 other upstream 1514125 29685967 ~ 29693851 (+) True LOC110486279
TU150186 other upstream 1566880 29600026 ~ 29641096 (+) True G130308
TU151868 other downstream 83235 31291470 ~ 31293034 (+) False LOC110534710
TU151908 other downstream 152201 31360436 ~ 31363213 (+) False eaf1
TU151909 other downstream 152201 31360436 ~ 31366322 (+) True eaf1
TU152486 other downstream 649413 31857648 ~ 31887572 (+) False G132342
TU152482 other downstream 649451 31857686 ~ 31883073 (+) True G132342

Expression Profile