RNA id: TU151863


Basic Information

Item Value
RNA id TU151863
length 212
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G131815
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 31252258 ~ 31252469 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTTATAACTTGAACGAGTTTTGTAATAAGATcaaaatgaataaaaacaaaAGTCATGTGACCTACCGATGAGGTGAATCAACCTGCTTGTCATGCTAATGTCGTGCGAATGACTGACAAAACATCACTTAAATTAAATGCACTAATCTTCTAAGCTTGTGAAATAGTCCACGTGACTCTGTGATAATGTGACACTTATAGCTCAGACACAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU151861 lncRNA upstream 2425 31249619 ~ 31249833 (+) True G131813
TU151836 lncRNA upstream 23680 31228173 ~ 31228578 (+) True G131794
TU151824 lncRNA upstream 44023 31207976 ~ 31208235 (+) True G131782
TU151819 lncRNA upstream 56535 31195378 ~ 31195723 (+) True G131777
TU151810 lncRNA upstream 63943 31188008 ~ 31188315 (+) True G131773
TU151849 lncRNA downstream 3355 31255824 ~ 31257043 (+) False mxtx2
TU151846 lncRNA downstream 7963 31260432 ~ 31261041 (+) True mxtx2
TU151870 lncRNA downstream 41209 31293678 ~ 31294226 (+) True LOC110534710
TU151886 lncRNA downstream 43228 31295697 ~ 31295995 (+) True G131835
TU151898 lncRNA downstream 82813 31335282 ~ 31388272 (+) True G131847
XM_021558742.2 mRNA upstream 30179 31208985 ~ 31222079 (+) False LOC110486889
XM_021558750.2 mRNA upstream 30179 31208985 ~ 31222079 (+) True LOC110486889
XM_036933421.1 mRNA upstream 49866 31199335 ~ 31202392 (+) False sri
XM_036945721.1 mRNA downstream 4048 31256517 ~ 31261130 (+) False mxtx2
XM_021558777.2 mRNA downstream 6493 31258962 ~ 31261130 (+) False mxtx2
XM_036945724.1 mRNA downstream 6495 31258964 ~ 31261130 (+) False mxtx2
XM_036945725.1 mRNA downstream 6511 31258980 ~ 31261130 (+) False mxtx2
XM_021558792.2 mRNA downstream 6609 31259078 ~ 31261130 (+) False mxtx2
TU151514 other upstream 502304 30748055 ~ 30749954 (+) True G131517
TU151478 other upstream 551635 30700182 ~ 30700623 (+) True G131491
TU150298 other upstream 1462427 29789576 ~ 29789831 (+) True G130414
TU150246 other upstream 1558407 29685967 ~ 29693851 (+) True LOC110486279
TU150186 other upstream 1611162 29600026 ~ 29641096 (+) True G130308
TU151868 other downstream 39001 31291470 ~ 31293034 (+) False LOC110534710
TU151908 other downstream 107967 31360436 ~ 31363213 (+) False eaf1
TU151909 other downstream 107967 31360436 ~ 31366322 (+) True eaf1
TU152486 other downstream 605179 31857648 ~ 31887572 (+) False G132342
TU152482 other downstream 605217 31857686 ~ 31883073 (+) True G132342

Expression Profile