RNA id: TU151939


Basic Information

Item Value
RNA id TU151939
length 384
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G131886
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 31395089 ~ 31395472 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cgttgttgccggtgacgtctggtgaggacctgccttacaactggcctacaagccctcagtccagcctctctcagcctattgcggaaagtctgagcactgatggagggattgtgcgttcctggtgtaactcgggcagttgttgttgccctcctgtacctgtcccaaagctgtgatgttcggatgtaccgatcctgtgcaggtgttgttaaacgtggtctgccactgcgaggacgatcagctgtccgtcctgtctccctgtagcactgtcttaggcgtctcacagtacggacattgcaatttattgccctggccacatctgcagtcctcatgcctccttgcagcatgcctaaggcacgttcatgcagatgagcagggaccctgggc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU151898 lncRNA upstream 6817 31335282 ~ 31388272 (+) True G131847
TU151886 lncRNA upstream 99094 31295697 ~ 31295995 (+) True G131835
TU151870 lncRNA upstream 100863 31293678 ~ 31294226 (+) True LOC110534710
TU151846 lncRNA upstream 134048 31260432 ~ 31261041 (+) True mxtx2
TU151849 lncRNA upstream 138046 31255824 ~ 31257043 (+) False mxtx2
TU151952 lncRNA downstream 35846 31431318 ~ 31431552 (+) True G131899
TU151954 lncRNA downstream 39264 31434736 ~ 31434966 (+) True G131901
TU151956 lncRNA downstream 43925 31439397 ~ 31439623 (+) True G131903
TU151962 lncRNA downstream 66215 31461687 ~ 31461888 (+) True G131909
TU151967 lncRNA downstream 83455 31478927 ~ 31479289 (+) True G131914
XM_021558857.2 mRNA upstream 28767 31360408 ~ 31366322 (+) False eaf1
XM_036945728.1 mRNA upstream 28767 31360408 ~ 31366322 (+) False eaf1
XM_021558804.2 mRNA upstream 79176 31300002 ~ 31315913 (+) True LOC110486933
XM_036945726.1 mRNA upstream 100512 31262054 ~ 31294577 (+) False LOC110534710
XM_036945724.1 mRNA upstream 133959 31258964 ~ 31261130 (+) False mxtx2
XM_036945732.1 mRNA downstream 194002 31589474 ~ 31624014 (+) False LOC110486995
XM_036945733.1 mRNA downstream 194007 31589479 ~ 31624014 (+) False LOC110486995
XM_021558888.2 mRNA downstream 200360 31595832 ~ 31624014 (+) True LOC110486995
XM_036945737.1 mRNA downstream 446266 31841738 ~ 31857595 (+) False LOC110534719
XM_036945736.1 mRNA downstream 446267 31841739 ~ 31857595 (+) True LOC110534719
TU151909 other upstream 28767 31360436 ~ 31366322 (+) True eaf1
TU151908 other upstream 31876 31360436 ~ 31363213 (+) False eaf1
TU151868 other upstream 102055 31291470 ~ 31293034 (+) False LOC110534710
TU151514 other upstream 645135 30748055 ~ 30749954 (+) True G131517
TU151478 other upstream 694466 30700182 ~ 30700623 (+) True G131491
TU152486 other downstream 462176 31857648 ~ 31887572 (+) False G132342
TU152482 other downstream 462214 31857686 ~ 31883073 (+) True G132342
TU153719 other downstream 1771966 33167438 ~ 33169378 (+) True G133473
TU153923 other downstream 2100982 33496454 ~ 33497285 (+) True G133663
TU154038 other downstream 2418561 33814033 ~ 33814483 (+) True G133760

Expression Profile