RNA id: TU151952


Basic Information

Item Value
RNA id TU151952
length 235
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G131899
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 31431318 ~ 31431552 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gttgcatataatcgatgcggtgcctgttcattaaatcattgaatcacagcctacttcgccaaacgggtgatttaacaagcgcattcatgAAAAAAGTACCGTCTTAGCGCCAATGTAccgaaccataaacatcaatgcctttcttaaaatcattacacaagtatacatttttaaacctgcatatttagttaatattgcctgctaacattaatttattttaattagggaaattgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU151939 lncRNA upstream 35846 31395089 ~ 31395472 (+) True G131886
TU151898 lncRNA upstream 43046 31335282 ~ 31388272 (+) True G131847
TU151886 lncRNA upstream 135323 31295697 ~ 31295995 (+) True G131835
TU151870 lncRNA upstream 137092 31293678 ~ 31294226 (+) True LOC110534710
TU151846 lncRNA upstream 170277 31260432 ~ 31261041 (+) True mxtx2
TU151954 lncRNA downstream 3184 31434736 ~ 31434966 (+) True G131901
TU151956 lncRNA downstream 7845 31439397 ~ 31439623 (+) True G131903
TU151962 lncRNA downstream 30135 31461687 ~ 31461888 (+) True G131909
TU151967 lncRNA downstream 47375 31478927 ~ 31479289 (+) True G131914
TU151970 lncRNA downstream 53344 31484896 ~ 31485140 (+) True G131917
XM_021558857.2 mRNA upstream 64996 31360408 ~ 31366322 (+) False eaf1
XM_036945728.1 mRNA upstream 64996 31360408 ~ 31366322 (+) False eaf1
XM_021558804.2 mRNA upstream 115405 31300002 ~ 31315913 (+) True LOC110486933
XM_036945726.1 mRNA upstream 136741 31262054 ~ 31294577 (+) False LOC110534710
XM_021558792.2 mRNA upstream 170188 31259078 ~ 31261130 (+) False mxtx2
XM_036945732.1 mRNA downstream 157922 31589474 ~ 31624014 (+) False LOC110486995
XM_036945733.1 mRNA downstream 157927 31589479 ~ 31624014 (+) False LOC110486995
XM_021558888.2 mRNA downstream 164280 31595832 ~ 31624014 (+) True LOC110486995
XM_036945737.1 mRNA downstream 410186 31841738 ~ 31857595 (+) False LOC110534719
XM_036945736.1 mRNA downstream 410187 31841739 ~ 31857595 (+) True LOC110534719
TU151909 other upstream 64996 31360436 ~ 31366322 (+) True eaf1
TU151908 other upstream 68105 31360436 ~ 31363213 (+) False eaf1
TU151868 other upstream 138284 31291470 ~ 31293034 (+) False LOC110534710
TU151514 other upstream 681364 30748055 ~ 30749954 (+) True G131517
TU151478 other upstream 730695 30700182 ~ 30700623 (+) True G131491
TU152486 other downstream 426096 31857648 ~ 31887572 (+) False G132342
TU152482 other downstream 426134 31857686 ~ 31883073 (+) True G132342
TU153719 other downstream 1735886 33167438 ~ 33169378 (+) True G133473
TU153923 other downstream 2064902 33496454 ~ 33497285 (+) True G133663
TU154038 other downstream 2382481 33814033 ~ 33814483 (+) True G133760

Expression Profile