RNA id: TCONS_00030009


Basic Information

Item Value
RNA id TCONS_00030009
length 787
lncRNA type inter_gene
GC content 0.33
exon number 3
gene id XLOC_014204
representative True

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 37569661 ~ 37570676 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAGTAAGAAACGAAGGAGACAATGTACAGAAATATAATGCTTTATTCAGAATAAAATATTGACACAGAGCTTAAGGTTCCCATTGCTTGCTGATGTTGATGTGATCTTTCTAACCACATTTTCCATTGTGGCTCCACGTCATGTAGTTGGAAAGACTCCATGTTTGAAACTGGTGGCTCAAAGCATGTCATTTAGATAGAAAAGACTCAGACaaagataaaaacaaagaaattatTCCGGAAGTTAGTGCTTTCCATTCATAGATTTACCACATGTTTATATAGGTTACTGATGTTGTCATTTAATATCTTACCATGTTTACCCTGTTTCATTGTAGTGGCTCAAACCATGCCATGTAGTGTACTGTGAGTTGAAAATCtcaaacaaagacaaaaacagaaacacattttcagaaatatatagtatttttttagaATTAAACAGTAAAGAACACTTaaacaatagtttatatatatttctgatGTTGTTGTGATCTTACCATGTTTCCTTTGTGCCGCCTTGTCTTGTAGTTGGAAAGACTCGTGCAGAGAAATAAACAAAGAAGAAAATGTTCAGAAATATAGTGATTGGTATAAATAAAGTATTCATGCAGCATTTCACCACAATTTTATATAGGTTTCTGATGTTGATGTGATCTTACCGTGTTTACTATTGTATTTGTACACCATGTCAAGAGCTGTAGTTGAAAAGACTCTATGTTTGCCATTGTGTCAGCTCAAACCACATCATGTAGAAGGAAAGACTCatgcaaaaaaagaaatagaaG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00030008 lncRNA upstream 70982 37494319 ~ 37498679 (+) True XLOC_014202
TCONS_00030007 lncRNA upstream 942027 36625129 ~ 36627634 (+) False XLOC_014196
TCONS_00028241 lncRNA upstream 942027 36625275 ~ 36627634 (+) False XLOC_014196
TCONS_00028242 lncRNA upstream 942027 36625686 ~ 36627634 (+) True XLOC_014196
TCONS_00030006 lncRNA upstream 989823 36578914 ~ 36579838 (+) True XLOC_014195
TCONS_00029728 lncRNA downstream 367131 37937807 ~ 37948286 (+) True XLOC_014208
TCONS_00030010 lncRNA downstream 446923 38017599 ~ 38020095 (+) True XLOC_014209
TCONS_00030011 lncRNA downstream 807723 38378399 ~ 38384624 (+) True XLOC_014212
TCONS_00030012 lncRNA downstream 884958 38455634 ~ 38467600 (+) False XLOC_014213
TCONS_00030013 lncRNA downstream 902764 38473440 ~ 38475865 (+) True XLOC_014214
TCONS_00028248 mRNA upstream 50051 37509638 ~ 37519610 (+) True XLOC_014203
TCONS_00028247 mRNA upstream 77144 37458610 ~ 37492517 (+) True XLOC_014201
TCONS_00028246 mRNA upstream 430209 37135700 ~ 37139452 (+) True XLOC_014200
TCONS_00028245 mRNA upstream 435450 37120491 ~ 37134211 (+) True XLOC_014199
TCONS_00028244 mRNA upstream 449770 37118547 ~ 37119891 (+) True XLOC_014198
TCONS_00028249 mRNA downstream 49666 37620342 ~ 37842003 (+) False XLOC_014205
TCONS_00028251 mRNA downstream 130774 37701450 ~ 37842003 (+) True XLOC_014205
TCONS_00028253 mRNA downstream 278154 37848830 ~ 37928041 (+) False XLOC_014207
TCONS_00028252 mRNA downstream 278154 37848830 ~ 37928041 (+) False XLOC_014207
TCONS_00028254 mRNA downstream 287260 37857936 ~ 37927491 (+) False XLOC_014207
TCONS_00028243 other upstream 889454 36680091 ~ 36680207 (+) True XLOC_014197
TCONS_00028240 other upstream 1326753 36242791 ~ 36242908 (+) True XLOC_014194
TCONS_00028239 other upstream 1366466 36203078 ~ 36203195 (+) True XLOC_014193
TCONS_00028237 other upstream 1790704 35778842 ~ 35778957 (+) True XLOC_014189
TCONS_00028229 other upstream 2822928 34742706 ~ 34746733 (+) False XLOC_014179
TCONS_00028250 other downstream 98984 37669660 ~ 37669774 (+) True XLOC_014206
TCONS_00028259 other downstream 685600 38256276 ~ 38256392 (+) True XLOC_014211
TCONS_00028260 other downstream 851383 38422059 ~ 38426683 (+) False XLOC_014213
TCONS_00028262 other downstream 893455 38464131 ~ 38466651 (+) True XLOC_014213
TCONS_00028264 other downstream 1377896 38948572 ~ 38948686 (+) True XLOC_014217