RNA id: TU152294


Basic Information

Item Value
RNA id TU152294
length 445
lncRNA type intronic
GC content 0.41
exon number 1
gene id G132189
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 31477272 ~ 31477716 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGGTAGAAGATGAAGTTCTTACATAACCACATCTGACAATTACTGAGACTTTGTCACTTGAAAAAGGGCAGCTAAAGAGGAACACTTTTATTACACATTTGATACATGTTACGGCCAAATCCTAACTTGATACTCCAGAGAGATATTTGACACACAGGTTTGAGTTGTATGTACatttagtgtacaaaacattaggaacaccttcctaatattgacttgcacccccttttgccctcagaacagcctcaattcatcagggtatggactgcaaggtgtcgaaagtgttccacagggatgctggcccatgttgactccaatgcttcccacagtcccAAGTTAGCTGGAtgacctttgggtggtggaccattcttgatacacacaggaaactgttgagcgtgaaaaactcagcagcgttgcagttcttgacacactcaaaccggtgcg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU152293 lncRNA downstream 676 31476289 ~ 31476596 (-) True G132188
TU152289 lncRNA downstream 6650 31470381 ~ 31470622 (-) True G132184
TU152286 lncRNA downstream 37820 31439184 ~ 31439452 (-) True G132181
TU152285 lncRNA downstream 38617 31438361 ~ 31438655 (-) True G132180
TU152279 lncRNA downstream 45719 31431198 ~ 31431553 (-) True G132174
TU152326 lncRNA upstream 14751 31492467 ~ 31492670 (-) True G132212
TU152310 lncRNA upstream 76742 31554458 ~ 31560434 (-) True LOC118936732
TU152319 lncRNA upstream 90744 31568460 ~ 31576217 (-) True LOC118939115
TU152361 lncRNA upstream 119681 31597397 ~ 31604712 (-) True G132246
TU152363 lncRNA upstream 140321 31618037 ~ 31623113 (-) True G132248
XM_021558832.2 mRNA downstream 88723 31366329 ~ 31388549 (-) True LOC110486958
XM_021558844.2 mRNA downstream 117053 31357834 ~ 31360219 (-) True LOC110486970
XM_021558814.2 mRNA downstream 124640 31317605 ~ 31352632 (-) True LOC110486940
XM_021558825.2 mRNA downstream 177296 31298133 ~ 31299976 (-) True pkdc
XM_036945727.1 mRNA downstream 177425 31298133 ~ 31299847 (-) False pkdc
XR_005036376.1 mRNA upstream 91505 31569221 ~ 31576243 (-) False LOC118939115
trnap-agg-2 mRNA upstream 99072 31576788 ~ 31576859 (-) True trnap-agg-2
XM_036945731.1 mRNA upstream 99729 31577445 ~ 31582044 (-) False LOC110486984
XM_036945730.1 mRNA upstream 99729 31577445 ~ 31590842 (-) True LOC110486984
NM_001165192.1 mRNA upstream 114430 31592146 ~ 31595728 (-) True dctn3
TU152092 other downstream 278460 31197073 ~ 31198812 (-) True LOC110486868
TU152142 other downstream 280980 31192466 ~ 31196292 (-) False LOC110486852
TU152311 other upstream 58331 31536047 ~ 31543009 (-) True G132197
TU152378 other upstream 157604 31635320 ~ 31648795 (-) True LOC110486999
TU154326 other upstream 1261113 32738829 ~ 32751578 (-) False LOC110514821
TU154330 other upstream 1261113 32738829 ~ 32751578 (-) False LOC110514821
TU154412 other upstream 1270492 32748208 ~ 32788121 (-) True G134102

Expression Profile