RNA id: TU152033


Basic Information

Item Value
RNA id TU152033
length 1529
lncRNA type antisense_over
GC content 0.49
exon number 2
gene id G131968
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 31577067 ~ 31578629 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGACAAGTTTTATTCACAAGTTATTTCCCCCGCTGTTCTTTAGACAAATCTGAAGTTAAGAAAAGGCCACATGCAGGTGTAGCAGCACGTTTAAAACGCTAACATTTTAAATATAAAACGTCAAACATGTGCAAGACAAAACTGAgaaacttaagggggggataaGCATTTCCAAGCTTGAGGTAGAACCACAAAATAAAATGGTCAATGGGTGTAGATAAAAGGCCAAGTCAAACAAAATGAATCTTATTGAATGTCGCTGATCCACAGACCAAGGTGCTTTATTTACCCAGTGGTGTTCTCTTGTAATATACTGCCTATTGATTAGGCTACTTTTCCTGTGTAATGACTTCTTTGGTAGCACTTTATTTGACACTATATCATTCATAAAGTCAGTTACATTAACAGTAATACCCCATAACTAACTTATGAAAATCTTTAGCACCACTAGTTACTACTATTATCGCAACTGTCATTCACAATTTTGTTTAATTTCTTGattcaatttttattttatttttttacctttatttaactaggcaagacagttaagaacaaattcttatttacaatgacagcctaggaacagtgggttaactgccttgttcaggggcagaacaaaatTTATTGATATAAGCACCATAAGGTATCTTATAACTCATGCAGTATATTTAAATGGCACATCAAATGTGCAGTGTTAGTACTCTAGTAAAATAAAGTGCTACTTTCTAGTGTGGCTACAGTAGCAAAGTCCCCATGTGAAAAAACTGATAGAGATGCAGACATGGCTTTTCTTGTGCAAGACAGAATCCATTACTGCATCCATAAAACCACTGATAACATTCACACCAATGTCTGAGTATGGTTCACCCGTAGACAGGTTCACGTTATTTTTTCAGACCTACATTGATTCCTGTAGCCAAGCTGTTGCACAACGCAAGGTGACGTAGTGTGGTGAAATGCATGCTAGGACTGTTCCAAAGACGTCGCTGTGTTCTTGTGTGGATGCTCGGTTTATGACTTGCAAGCTGATACAAGCATTACAATATCAAAAATATGAACAATTACACgcaaattataaaaaatatttagttagcattttttggggggttgctATTACTTTTTAGTTATGGGGTGGAGTACATCGACAAGGTTGCAGACAGACAAAGACTGAGGCTGTGTACTTTAAAATAGTTCATTGAGAGGAGAATAAATGTCTTcataaagaggggaagggaaCATCCAGTACCCAACCATGACCCTATGGTTGGTGGCAGAGGTGGGATCCAAGGAGGGGTGCCCATGGAGCTAGTGTATGTCGAGGCTGTGAGTCAGTGGCGGGGGGCCAGTAACGTCCGTCTGGGGGTTCAGAGGTCGGTTCATTTTCCATGGGTTTGGGGGAAGTGTGTCAGTATGATGTGGAGAGGGGATGAGTTATAGGATCTTCTGAAGGATGGAATTGGGCACTTCTAGAGTCTCGTCCTTTACCAAGACGATGTCATAAGAGTCCAGATATTTCTCCAAACGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU152018 lncRNA upstream 15687 31560610 ~ 31561380 (+) True G131957
TU152004 lncRNA upstream 37630 31539012 ~ 31539437 (+) True G131946
TU151983 lncRNA upstream 64925 31509542 ~ 31512142 (+) True G131925
TU151976 lncRNA upstream 72222 31504637 ~ 31504845 (+) True G131923
TU151971 lncRNA upstream 90636 31486185 ~ 31486431 (+) True G131918
TU152038 lncRNA downstream 13511 31592140 ~ 31592593 (+) True G131970
TU152052 lncRNA downstream 48366 31626995 ~ 31627345 (+) True G131983
TU152057 lncRNA downstream 53335 31631964 ~ 31633994 (+) True G131988
TU152067 lncRNA downstream 78778 31657407 ~ 31657610 (+) True G131998
TU152069 lncRNA downstream 80624 31659253 ~ 31659535 (+) True G132000
XM_021558857.2 mRNA upstream 210745 31360408 ~ 31366322 (+) False eaf1
XM_036945728.1 mRNA upstream 210745 31360408 ~ 31366322 (+) False eaf1
XM_021558804.2 mRNA upstream 261154 31300002 ~ 31315913 (+) True LOC110486933
XM_036945726.1 mRNA upstream 282490 31262054 ~ 31294577 (+) False LOC110534710
XM_021558792.2 mRNA upstream 315937 31259078 ~ 31261130 (+) False mxtx2
XM_036945732.1 mRNA downstream 10845 31589474 ~ 31624014 (+) False LOC110486995
XM_036945733.1 mRNA downstream 10850 31589479 ~ 31624014 (+) False LOC110486995
XM_021558888.2 mRNA downstream 17203 31595832 ~ 31624014 (+) True LOC110486995
XM_036945737.1 mRNA downstream 263109 31841738 ~ 31857595 (+) False LOC110534719
XM_036945736.1 mRNA downstream 263110 31841739 ~ 31857595 (+) True LOC110534719
TU151909 other upstream 210745 31360436 ~ 31366322 (+) True eaf1
TU151908 other upstream 213854 31360436 ~ 31363213 (+) False eaf1
TU151868 other upstream 284033 31291470 ~ 31293034 (+) False LOC110534710
TU151514 other upstream 827113 30748055 ~ 30749954 (+) True G131517
TU151478 other upstream 876444 30700182 ~ 30700623 (+) True G131491
TU152486 other downstream 279019 31857648 ~ 31887572 (+) False G132342
TU152482 other downstream 279057 31857686 ~ 31883073 (+) True G132342
TU153719 other downstream 1588809 33167438 ~ 33169378 (+) True G133473
TU153923 other downstream 1917825 33496454 ~ 33497285 (+) True G133663
TU154038 other downstream 2235404 33814033 ~ 33814483 (+) True G133760

Expression Profile