RNA id: TU152057


Basic Information

Item Value
RNA id TU152057
length 2031
lncRNA type antisense_over
GC content 0.50
exon number 1
gene id G131988
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 31631964 ~ 31633994 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTCCAATTTCTCTCCTCTAGGGCTAAAGATGAAAGGGGATGCTTTGGTCATACTTTAGggttggaggaagagagggagagagaaaaaaaaagagaatggGGACTGATGTGCAACTGCTTCCAGGTCACCGGCATGGGGTCAGTTGCTATGGAGACAAACCATATGTCATCttacagccattataacagtcCAATCATATTGAATAGTGGGAGGAGCACCGGCAATTAAGTCATAAAGGGGAGGGGCCAGTGCATAAGAAGGCCGAGGTGCTTTGGTCTGTGCCATTTAAGAATGAGAAGGGGGATACATTTTtctcaaacaaaacaaaaactacaAAACCACAGCTAAAGAGCTAACACTTCATCACAGACAAACAGTACTCTTGGTCTTCTTTTCGATTCTTTAAAAGTCTCTTCTTTTTGGTGTGTTTGAAACTAAAGCCAAGTAAACTTTGGTTACTCGCCTCGAATCTGACAAATCCCATTTGAGAAGGTTTACTTGGTCCCCTTTTGCTATTGACAGTGTTTTGAAGTTCCCTTGGACTGTGGGCGGGGGGGGGATTCCCGGACTCACAGTCTTTATATGCTACATATTGAGCAGACTTCTCTGCACTTTGGATCATGTGGAGCTGCACTCCAGTTCATTTTGGAGTCTTCAAGTAGCAAAAGCAATAAATAGAAACACACTTGCCTTCAGTTTCCCtctgaacagacacacacatacttacactccTACTCACAGGCATACAATCATACACACATTGAGGTAACTGTTGTTGAAaatatacaaacaaacaaaaagcccTTTTTTGTAGAGCTCAGGATGAGCGTGGACATAGGGATGCTTGCTGGACGGGTCAGAAGGTCAAGCAACACCTTTTCTTTCTAATCAACAGTTCTGTTCACCTTTGGCAAAACAAAGTTGTGACCTTTGACCCTTTTTTAACCTGCTATATTgtttaaataaaatttaaaaaaagagaaGTGGGCACCCCTGCTTCTCAACAGGTCACACAGGACagatacaggcagagagagagaaagtatatACAAAGAAATGGCCCCAGAGTGAAATCAAAACCAGAAAAACAAACAGTAAATTACAATGAATTACCTGGTCATTGTCAACATCACTTCCACATATTGCTTTTTGAAGACAAAATAATTGCATAATAAATTAAGGAGGTTATATAACAAATTGAACAAAAATAACACTTGGAAAAGAGacaaataatagtaataataatgatatgaAATCCAGGGTGGATGATTGTCCTGTCTTAAGTGTAGGACACAGTGGAACAGTTTAGTAGTCTGGGGACAGTGTCTCTTGGAGCCCTGAGTACAGAAGTCCCTGAAAGTTTGAAAACCCCAGTCGCTACAACcatcaaaaatatatttacacTCATTGCTCCTGCTAACCAAGTTCTCAGAGCCACAGTCTGACTCAACGTCCTTCAAACGGTGAGCTTAAGCCTGTTCCTCGGACTCCTGCTTGATCGTGACGTTGGAAGGAAGAAGCGGACTGCTTCGGCGCAGTTTGATAACCGACGTCTCATTGACTGAATTGTACAGGCCGTAACCTGTAGACTGGAGCTCACTGGCGCCGCCCTTGTGGTGGTGGTAGCCGGAGGTCTTGAGGTCCATCTCCCTCCACAGCATCCCCAGGACCTGCTTCTCCAGGACAGCCTCAACCTCAACCCCTCCCTGGAGCTGGTCCAGCCTCTCAGCGTGGTCGCTCATGTCGAAGCGCTCAATCTCCTCGTTGATGCGCTGGAGCTCTTCCTGGGTGGAGGGGCTGGGGGTGGGGCCACCTGAGGAGGTGACGGCAGCCAGACAGTAGCCCTTCAGGTGTAGCCGCAGGCTGCACAGGTGAATGTAGTGGCGGTGGCAGTGGGGGCACTTGTGTGGCCGCTCGCGGGAGTGAAGGCGCTTGTGCAGCTTGAGGTGGACAAACTGGGTGAACTTGGCAGGGCAGAGCTTGCACGAGTAGGGCTTCTCACCCGAGTGGAGGCGCAGGTGGGTCTTTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU152052 lncRNA upstream 4619 31626995 ~ 31627345 (+) True G131983
TU152038 lncRNA upstream 39371 31592140 ~ 31592593 (+) True G131970
TU152032 lncRNA upstream 53335 31577067 ~ 31578629 (+) False G131968
TU152033 lncRNA upstream 53335 31577067 ~ 31578629 (+) True G131968
TU152018 lncRNA upstream 70584 31560610 ~ 31561380 (+) True G131957
TU152067 lncRNA downstream 23413 31657407 ~ 31657610 (+) True G131998
TU152069 lncRNA downstream 25259 31659253 ~ 31659535 (+) True G132000
TU152071 lncRNA downstream 35220 31669214 ~ 31669425 (+) True G132002
TU152073 lncRNA downstream 47894 31681888 ~ 31682695 (+) True G132004
TU152080 lncRNA downstream 61196 31695190 ~ 31695449 (+) True G132011
XM_036945732.1 mRNA upstream 7950 31589474 ~ 31624014 (+) False LOC110486995
XM_036945733.1 mRNA upstream 7950 31589479 ~ 31624014 (+) False LOC110486995
XM_021558888.2 mRNA upstream 7950 31595832 ~ 31624014 (+) True LOC110486995
XM_021558857.2 mRNA upstream 265642 31360408 ~ 31366322 (+) False eaf1
XM_036945737.1 mRNA downstream 207744 31841738 ~ 31857595 (+) False LOC110534719
XM_036945736.1 mRNA downstream 207745 31841739 ~ 31857595 (+) True LOC110534719
XM_036945740.1 mRNA downstream 279686 31913680 ~ 31931649 (+) False LOC110487037
XM_036945739.1 mRNA downstream 279686 31913680 ~ 31933154 (+) False LOC110487037
XM_036945741.1 mRNA downstream 279687 31913681 ~ 31931649 (+) True LOC110487037
TU151909 other upstream 265642 31360436 ~ 31366322 (+) True eaf1
TU151908 other upstream 268751 31360436 ~ 31363213 (+) False eaf1
TU151868 other upstream 338930 31291470 ~ 31293034 (+) False LOC110534710
TU151514 other upstream 882010 30748055 ~ 30749954 (+) True G131517
TU151478 other upstream 931341 30700182 ~ 30700623 (+) True G131491
TU152486 other downstream 223654 31857648 ~ 31887572 (+) False G132342
TU152482 other downstream 223692 31857686 ~ 31883073 (+) True G132342
TU153719 other downstream 1533444 33167438 ~ 33169378 (+) True G133473
TU153923 other downstream 1862460 33496454 ~ 33497285 (+) True G133663
TU154038 other downstream 2180039 33814033 ~ 33814483 (+) True G133760

Expression Profile