RNA id: TU152069


Basic Information

Item Value
RNA id TU152069
length 283
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G132000
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 31659253 ~ 31659535 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tttccatattgactaatctttatgtcttaaagtgatggtctgttgtttctctttgcttatttgagctgttcttgccataatatggacttggtcttttaccaaatagggctattttctgtatactacccctaccttgtaacaacacaactaattgtctcaaatgcattaagaaggaaagaaattccacaaatgaacttttaacaaggcacacctgttaattgaaagtaattccaggtgactacctcatgaagctggttgagagaatgccaagagtgtgcaaagc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU152067 lncRNA upstream 1643 31657407 ~ 31657610 (+) True G131998
TU152057 lncRNA upstream 25259 31631964 ~ 31633994 (+) True G131988
TU152052 lncRNA upstream 31908 31626995 ~ 31627345 (+) True G131983
TU152038 lncRNA upstream 66660 31592140 ~ 31592593 (+) True G131970
TU152032 lncRNA upstream 80624 31577067 ~ 31578629 (+) False G131968
TU152071 lncRNA downstream 9679 31669214 ~ 31669425 (+) True G132002
TU152073 lncRNA downstream 22353 31681888 ~ 31682695 (+) True G132004
TU152080 lncRNA downstream 35655 31695190 ~ 31695449 (+) True G132011
TU152081 lncRNA downstream 36525 31696060 ~ 31696292 (+) True G132012
TU152083 lncRNA downstream 37311 31696846 ~ 31697080 (+) True G132014
XM_036945732.1 mRNA upstream 35239 31589474 ~ 31624014 (+) False LOC110486995
XM_036945733.1 mRNA upstream 35239 31589479 ~ 31624014 (+) False LOC110486995
XM_021558888.2 mRNA upstream 35239 31595832 ~ 31624014 (+) True LOC110486995
XM_021558857.2 mRNA upstream 292931 31360408 ~ 31366322 (+) False eaf1
XM_036945737.1 mRNA downstream 182203 31841738 ~ 31857595 (+) False LOC110534719
XM_036945736.1 mRNA downstream 182204 31841739 ~ 31857595 (+) True LOC110534719
XM_036945740.1 mRNA downstream 254145 31913680 ~ 31931649 (+) False LOC110487037
XM_036945739.1 mRNA downstream 254145 31913680 ~ 31933154 (+) False LOC110487037
XM_036945741.1 mRNA downstream 254146 31913681 ~ 31931649 (+) True LOC110487037
TU151909 other upstream 292931 31360436 ~ 31366322 (+) True eaf1
TU151908 other upstream 296040 31360436 ~ 31363213 (+) False eaf1
TU151868 other upstream 366219 31291470 ~ 31293034 (+) False LOC110534710
TU151514 other upstream 909299 30748055 ~ 30749954 (+) True G131517
TU151478 other upstream 958630 30700182 ~ 30700623 (+) True G131491
TU152486 other downstream 198113 31857648 ~ 31887572 (+) False G132342
TU152482 other downstream 198151 31857686 ~ 31883073 (+) True G132342
TU153719 other downstream 1507903 33167438 ~ 33169378 (+) True G133473
TU153923 other downstream 1836919 33496454 ~ 33497285 (+) True G133663
TU154038 other downstream 2154498 33814033 ~ 33814483 (+) True G133760

Expression Profile