RNA id: TU152081


Basic Information

Item Value
RNA id TU152081
length 233
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G132012
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 31696060 ~ 31696292 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agacaggattgtgttgaggcacagatctggggaagggtaccaaaaaaattctgcagcattgaaggtccccaagaacacagtggcctccatcattcttaaatggaaaaagttttgaaccaccaagactcttcctagagctggccacccagtcaaactgagcaatcagggggaaggggaggtgaccaagaatccaatggtcactctgacagagctccagagttcctctgtggaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU152080 lncRNA upstream 611 31695190 ~ 31695449 (+) True G132011
TU152073 lncRNA upstream 13365 31681888 ~ 31682695 (+) True G132004
TU152071 lncRNA upstream 26635 31669214 ~ 31669425 (+) True G132002
TU152069 lncRNA upstream 36525 31659253 ~ 31659535 (+) True G132000
TU152067 lncRNA upstream 38450 31657407 ~ 31657610 (+) True G131998
TU152083 lncRNA downstream 554 31696846 ~ 31697080 (+) True G132014
TU152429 lncRNA downstream 66888 31763180 ~ 31847313 (+) True G132311
TU152491 lncRNA downstream 137878 31834170 ~ 31879206 (+) False G132342
TU152553 lncRNA downstream 206748 31903040 ~ 31903689 (+) True G132402
TU152558 lncRNA downstream 216664 31912956 ~ 31913253 (+) True G132407
XM_036945732.1 mRNA upstream 72046 31589474 ~ 31624014 (+) False LOC110486995
XM_036945733.1 mRNA upstream 72046 31589479 ~ 31624014 (+) False LOC110486995
XM_021558888.2 mRNA upstream 72046 31595832 ~ 31624014 (+) True LOC110486995
XM_021558857.2 mRNA upstream 329738 31360408 ~ 31366322 (+) False eaf1
XM_036945737.1 mRNA downstream 145446 31841738 ~ 31857595 (+) False LOC110534719
XM_036945736.1 mRNA downstream 145447 31841739 ~ 31857595 (+) True LOC110534719
XM_036945740.1 mRNA downstream 217388 31913680 ~ 31931649 (+) False LOC110487037
XM_036945739.1 mRNA downstream 217388 31913680 ~ 31933154 (+) False LOC110487037
XM_036945741.1 mRNA downstream 217389 31913681 ~ 31931649 (+) True LOC110487037
TU151909 other upstream 329738 31360436 ~ 31366322 (+) True eaf1
TU151908 other upstream 332847 31360436 ~ 31363213 (+) False eaf1
TU151868 other upstream 403026 31291470 ~ 31293034 (+) False LOC110534710
TU151514 other upstream 946106 30748055 ~ 30749954 (+) True G131517
TU151478 other upstream 995437 30700182 ~ 30700623 (+) True G131491
TU152486 other downstream 161356 31857648 ~ 31887572 (+) False G132342
TU152482 other downstream 161394 31857686 ~ 31883073 (+) True G132342
TU153719 other downstream 1471146 33167438 ~ 33169378 (+) True G133473
TU153923 other downstream 1800162 33496454 ~ 33497285 (+) True G133663
TU154038 other downstream 2117741 33814033 ~ 33814483 (+) True G133760

Expression Profile