RNA id: TU152429


Basic Information

Item Value
RNA id TU152429
length 1993
lncRNA type read_through
GC content 0.37
exon number 3
gene id G132311
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 31763180 ~ 31847313 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agcGTCAGATAGTACATTACACATGATCATTTTCAGAGCAGAAATAAATATATTGCACTTAGAAAATCAACAAAACAAATCTTGTTAGACGTCATCCTGTATATTTAGATTACActtaaagtaataataaaaacacAGCAAAAACATGACAAAATCCTTGCAGATCTATTTCCCATGGCATACTTTGAGTGTGCGTACACATTGTTCAAAATGGAAAGTTGAAAGTTACAATCCCCCCCTTCTACCAAGACTTGGTGAGATTGGCAGACTGCCTACACAAGGACATATTCATAGATGGGGAGTCAAGTCCAGATGTAGGCTATAGATTGAAGAGAACACCAGTTGAAGACCTTTGTTAGAGTTCTTATGCGCAAATTGTTTAACATTGAAAACACTTGCCTCTTTCAACTGAACGCCTTAGAGTTAGTGCTCTCACTGGCAATCATCATCTCTGATAGCACCTTGATAAAGCCTCCAAATCCATGCATTGTGTAGGCTACTGAGAGTTGTCTACTGAGAGTTGTCCTACAACACGTTTTCAACTAAAAACATCCTGCAAAACTGATTCCAACTTCAAACCTGCTGACTGCTTGTGGACACATGGTATGCAAGTGGTGAGTAAGTGTCAACAGTAATGTAAGCTAAATGCAGAGTTAGTGCCCACAATAATATTGTGTTAATTGTAGCCTAATTTATGTGTGTTTTTTGGCTCCATGTGATTGGTTTGTTCAGTATAACGAAATTGAGAGACTCAACATTGAAAACAAAACCAACAATGAAATACTGTATTAGACCTTCACTTCCATCCAAGTTTGTCCCATTTTGCCCCAAAAAGAGAGATCTTCATACTAAAAATAATTGTCAGGATGTCTTAGCTGTGAATTAGAGGTTTACAAAGTTGCCTTAGTTGTAATTTTCTTGACAAAATAGGAACGGCATTTTACAATAACATCTGTGTTACGGTGGTAACAAACTGTATGAGACATCATTGAGTGGATGAATCCATCTGCAATTATTCTTTTTTTGAGAGGAGTGGCACTACAAAGGACCCGATGCATACACTGTATGTTTTGTGTCACTAGCTTAGCTTCTGTGTCATTTTGGTTAGAAGGGGCTAGCTGATAAATCGCCAATGGTGTGACGACCACCCTCCTCTAAGGGGAGGCAACACTGAGTCATTATTTACAGGTGTGGACTTTCTCCCAGAGTGCTGTAGTGTCGACACAGCCTGAGGCAGACATAGATCAGGCTACAGTAATCAGGCTACAGTAATCAGGCTTCAGTAATCAGGCTTCAGTAATCAGGCTTCAGTAATCAGACTACAGTAATCAGGCTACAGTAATCAGGCTACAGTAATCAGACTACAGTAATCAGGCTACAGTAATCAGACTACAGTAATCAGGCTATAGTGTGGCGCCAGAGATTAGGTATTGGTTAGGTGGTGAATCAAGCTTCAGGCCAATACAACAAGAGAAAGTCCATCTTTGCCTTTCAGGGCAGCAGAGTTTGCTGGTTTTCTCTTCCTCTTGGTACTTCATTTATACATTACTGATTTGCGATTGATTGGTTAGAGAAGACAATCCGCTGGTGTTGGGGATACGTTACGACGTAGCGTGATTTCAGCGCTCTGGGACTTCGCTAGAGAGGTCCTCCAAAGGTCTTCTAGGGCCCATCCACATGTGAGACATGAACAAACATCACTTTCCATTGACCACACAAATCAAATACATGTACATGTTTTACTCATTGTATGTAGTACACACAAACATTATGAGGTGAATATAAGCTTTTTGGATGACATAGAAAACTGAAAAAGTAGTTTGAGACCTGGTTGGGGTGaggatttttttaaacaaatgttttCTGTGTTATCTTTTGCAAACAGCATGCTTCCTATGATATGGCACTCTATGACATTCATCTTATAgtttgtgtcctgtgtgtgtgtagtgtgtgtgttgtgtgtgtgtgtgtgtgtgtATATCTGGTTTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU152083 lncRNA upstream 66100 31696846 ~ 31697080 (+) True G132014
TU152081 lncRNA upstream 66888 31696060 ~ 31696292 (+) True G132012
TU152080 lncRNA upstream 67731 31695190 ~ 31695449 (+) True G132011
TU152073 lncRNA upstream 80485 31681888 ~ 31682695 (+) True G132004
TU152071 lncRNA upstream 93755 31669214 ~ 31669425 (+) True G132002
TU152553 lncRNA downstream 55727 31903040 ~ 31903689 (+) True G132402
TU152558 lncRNA downstream 65643 31912956 ~ 31913253 (+) True G132407
TU152564 lncRNA downstream 86644 31933957 ~ 31934251 (+) True G132413
TU152567 lncRNA downstream 89811 31937124 ~ 31937342 (+) True G132416
TU152568 lncRNA downstream 91882 31939195 ~ 31939419 (+) True G132417
XM_036945732.1 mRNA upstream 139166 31589474 ~ 31624014 (+) False LOC110486995
XM_036945733.1 mRNA upstream 139166 31589479 ~ 31624014 (+) False LOC110486995
XM_021558888.2 mRNA upstream 139166 31595832 ~ 31624014 (+) True LOC110486995
XM_021558857.2 mRNA upstream 396858 31360408 ~ 31366322 (+) False eaf1
XM_036945740.1 mRNA downstream 66367 31913680 ~ 31931649 (+) False LOC110487037
XM_036945739.1 mRNA downstream 66367 31913680 ~ 31933154 (+) False LOC110487037
XM_036945741.1 mRNA downstream 66368 31913681 ~ 31931649 (+) True LOC110487037
XM_036945742.1 mRNA downstream 94653 31941966 ~ 31974601 (+) False LOC110487045
XM_036945749.1 mRNA downstream 94767 31942080 ~ 31973874 (+) False LOC110487045
TU151909 other upstream 396858 31360436 ~ 31366322 (+) True eaf1
TU151908 other upstream 399967 31360436 ~ 31363213 (+) False eaf1
TU151868 other upstream 470146 31291470 ~ 31293034 (+) False LOC110534710
TU151514 other upstream 1013226 30748055 ~ 30749954 (+) True G131517
TU151478 other upstream 1062557 30700182 ~ 30700623 (+) True G131491
TU152486 other downstream 10335 31857648 ~ 31887572 (+) False G132342
TU152482 other downstream 10373 31857686 ~ 31883073 (+) True G132342
TU153719 other downstream 1320125 33167438 ~ 33169378 (+) True G133473
TU153923 other downstream 1649141 33496454 ~ 33497285 (+) True G133663
TU154038 other downstream 1966720 33814033 ~ 33814483 (+) True G133760

Expression Profile