RNA id: TU152567


Basic Information

Item Value
RNA id TU152567
length 219
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G132416
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 31937124 ~ 31937342 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGTACTTAGCTAATTATCCCAGTCATAGGCTGTAAAAGTGCTGTCGACAAGAGGTTTCAGTGCTTCCTAATGGGCAAAGCAACTCTGGCAGCCCCCGCATGGATTCCTGCAGTTCTGTCATCTTTCTGCTGGGTATTTGATGAGAACACATTAGCTGTGAACACATGAGGGGACAATGAcaatagagctctctctctctttctctttctctctatccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU152564 lncRNA upstream 2873 31933957 ~ 31934251 (+) True G132413
TU152558 lncRNA upstream 23871 31912956 ~ 31913253 (+) True G132407
TU152553 lncRNA upstream 33435 31903040 ~ 31903689 (+) True G132402
TU152491 lncRNA upstream 57918 31834170 ~ 31879206 (+) False G132342
TU152429 lncRNA upstream 89811 31763180 ~ 31847313 (+) True G132311
TU152568 lncRNA downstream 1853 31939195 ~ 31939419 (+) True G132417
TU152590 lncRNA downstream 39618 31976960 ~ 31977176 (+) True G132439
TU152592 lncRNA downstream 42246 31979588 ~ 31979690 (+) True G132441
TU152593 lncRNA downstream 44027 31981369 ~ 31981617 (+) True G132442
TU152594 lncRNA downstream 44533 31981875 ~ 31982285 (+) True G132443
XM_036945739.1 mRNA upstream 3970 31913680 ~ 31933154 (+) False LOC110487037
XM_036945740.1 mRNA upstream 5475 31913680 ~ 31931649 (+) False LOC110487037
XM_036945741.1 mRNA upstream 5475 31913681 ~ 31931649 (+) True LOC110487037
XM_036945737.1 mRNA upstream 79529 31841738 ~ 31857595 (+) False LOC110534719
XM_036945736.1 mRNA upstream 79529 31841739 ~ 31857595 (+) True LOC110534719
XM_036945742.1 mRNA downstream 4624 31941966 ~ 31974601 (+) False LOC110487045
XM_036945749.1 mRNA downstream 4738 31942080 ~ 31973874 (+) False LOC110487045
XM_036945752.1 mRNA downstream 4739 31942081 ~ 31973874 (+) False LOC110487045
XM_036945743.1 mRNA downstream 4739 31942081 ~ 31974601 (+) False LOC110487045
XM_036945744.1 mRNA downstream 4740 31942082 ~ 31974601 (+) False LOC110487045
TU152486 other upstream 49552 31857648 ~ 31887572 (+) False G132342
TU152482 other upstream 54051 31857686 ~ 31883073 (+) True G132342
TU151909 other upstream 570802 31360436 ~ 31366322 (+) True eaf1
TU151908 other upstream 573911 31360436 ~ 31363213 (+) False eaf1
TU151868 other upstream 644090 31291470 ~ 31293034 (+) False LOC110534710
TU153719 other downstream 1230096 33167438 ~ 33169378 (+) True G133473
TU153923 other downstream 1559112 33496454 ~ 33497285 (+) True G133663
TU154038 other downstream 1876691 33814033 ~ 33814483 (+) True G133760
TU155162 other downstream 2025075 33962417 ~ 33962658 (+) True G134735
TU156107 other downstream 2750613 34687955 ~ 34690946 (+) True si:dkey-30e9.6

Expression Profile