RNA id: TU152590


Basic Information

Item Value
RNA id TU152590
length 217
lncRNA type inter_gene
GC content 0.57
exon number 1
gene id G132439
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 31976960 ~ 31977176 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCCCAAAGCCTGCTGGGATGTTGGATTCATCCGCACACTGTCATTGGCTGAGGATGTGGTGGAACGATGGTGTGTGAATTCCACAGGGAGCCTCAGGATTGGCCAACACAAACACATATATGCACAGACAAGCATGCACGCCCGCACACGCACTCactcacgcatgcacgcacacacacacttgcagaaAAGCTCACAAAGCAGCTTGGGAAGCAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU152568 lncRNA upstream 37541 31939195 ~ 31939419 (+) True G132417
TU152567 lncRNA upstream 39618 31937124 ~ 31937342 (+) True G132416
TU152564 lncRNA upstream 42709 31933957 ~ 31934251 (+) True G132413
TU152558 lncRNA upstream 63707 31912956 ~ 31913253 (+) True G132407
TU152553 lncRNA upstream 73271 31903040 ~ 31903689 (+) True G132402
TU152592 lncRNA downstream 2412 31979588 ~ 31979690 (+) True G132441
TU152593 lncRNA downstream 4193 31981369 ~ 31981617 (+) True G132442
TU152594 lncRNA downstream 4699 31981875 ~ 31982285 (+) True G132443
TU152602 lncRNA downstream 57378 32034554 ~ 32034921 (+) True G132451
TU152619 lncRNA downstream 91651 32068827 ~ 32070846 (+) True G132468
XM_036945742.1 mRNA upstream 2359 31941966 ~ 31974601 (+) False LOC110487045
XM_036945743.1 mRNA upstream 2359 31942081 ~ 31974601 (+) False LOC110487045
XM_036945744.1 mRNA upstream 2359 31942082 ~ 31974601 (+) False LOC110487045
XM_036945745.1 mRNA upstream 2359 31942082 ~ 31974601 (+) False LOC110487045
XM_036945746.1 mRNA upstream 2359 31942082 ~ 31974601 (+) False LOC110487045
LOC110487089 mRNA downstream 8183 31985359 ~ 31987549 (+) True LOC110487089
XM_036945756.1 mRNA downstream 10508 31987684 ~ 32027099 (+) False LOC110534747
XM_036945754.1 mRNA downstream 18375 31995551 ~ 32027099 (+) False LOC110534747
XM_036945755.1 mRNA downstream 19842 31997018 ~ 32027099 (+) True LOC110534747
XM_021558973.2 mRNA downstream 79343 32056519 ~ 32063386 (+) False LOC110487062
TU152486 other upstream 89388 31857648 ~ 31887572 (+) False G132342
TU152482 other upstream 93887 31857686 ~ 31883073 (+) True G132342
TU151909 other upstream 610638 31360436 ~ 31366322 (+) True eaf1
TU151908 other upstream 613747 31360436 ~ 31363213 (+) False eaf1
TU151868 other upstream 683926 31291470 ~ 31293034 (+) False LOC110534710
TU153719 other downstream 1190262 33167438 ~ 33169378 (+) True G133473
TU153923 other downstream 1519278 33496454 ~ 33497285 (+) True G133663
TU154038 other downstream 1836857 33814033 ~ 33814483 (+) True G133760
TU155162 other downstream 1985241 33962417 ~ 33962658 (+) True G134735
TU156107 other downstream 2710779 34687955 ~ 34690946 (+) True si:dkey-30e9.6

Expression Profile