RNA id: TU152794


Basic Information

Item Value
RNA id TU152794
length 936
lncRNA type read_through
GC content 0.47
exon number 2
gene id G132631
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 31998807 ~ 32045508 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGTTGAGGGCATCCTGGCTCTCTAGGTGTGTGGTGAGAGTGACGTGTGTGGCGTTGCATCCTTGTCCTTCAAGGACGGGCATGTCTGCGGCCGCATCCATAGTGGACGCTGTGCATTACGACATCGGCTGGAGCGACCTGGGGGGCCTGTCCAGAGCAGCAAAACACACAGTACAGAGACGTGGTTCGGTCTTTGTTTGACCATGGCAATGATGCGCATGGCTCCCCTTCCCCTGTGGTCCTTGTATGCAGACACCATTAGATGCGTTGAAACCTTGactggtgttatagtgtatttgGCAGTGTGAACAGGGCAGCTAGAGTGGAAAGGGGGAGGAATGGCGCAAGCTTGAATAGAGTTGGTCCTGAAAGTCACCAATGGCCCTAGTGTGACACTCAGACACAGGATGATCAAACAGACTTTCCCTAACTGACTCCTGGTTTGGTGCAGGTCAGCCACCGGATCTGTATGAGCATGTGTCCCAATCAACAATCATGACGATAACACAACATTGATAACAACAACCGTCATCATGATTGTTACAAAGATCCTCATCATCCCTGTCATAATCAAAACATTGACAGGAATTTTATCAGTGATGCAATGAACAATCAGACAGGGAAAATCAAGACATATGGGCTTTCAATCGTCTTAATCCATCTGGTCCACCGTCCCCAAACAACCATCTCCAGATTAGGGGGTCGACCGATTagtcggaatggccgatttaattagagacgatttcaagttttcataacaatcggaaattggtatttttgggcgctgatTTTTTTGcatctttatttaatctttatttaactaggcaagtcagttaagaaaacattcttattttcaatgacggcctaggaacggtgggttaactgcttcattcaggggcagaacgacagattttcaccatgtcagctcgggggatcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU152777 lncRNA downstream 13435 31985139 ~ 31985372 (-) True G132617
TU152775 lncRNA downstream 15967 31982515 ~ 31982840 (-) True G132615
TU152774 lncRNA downstream 16719 31981870 ~ 31982088 (-) True G132614
TU152773 lncRNA downstream 17852 31980450 ~ 31980955 (-) True G132613
TU152772 lncRNA downstream 19715 31978592 ~ 31979092 (-) True G132612
TU153241 lncRNA upstream 261434 32306942 ~ 32307262 (-) True G133048
TU153270 lncRNA upstream 292502 32338010 ~ 32338999 (-) True G133077
TU153281 lncRNA upstream 304714 32350222 ~ 32350448 (-) True G133085
TU153256 lncRNA upstream 321181 32366689 ~ 32367374 (-) True G133063
TU153295 lncRNA upstream 352722 32398230 ~ 32399418 (-) True G133099
LOC110534740 mRNA downstream 92677 31897466 ~ 31906130 (-) True LOC110534740
LOC110534727 mRNA downstream 105902 31889030 ~ 31892905 (-) True LOC110534727
XM_036990495.1 mRNA downstream 115746 31857694 ~ 31883061 (-) True LOC100136303
XM_021617426.2 mRNA downstream 115747 31857694 ~ 31883060 (-) False LOC100136303
XR_002468177.2 mRNA upstream 23310 32068818 ~ 32075136 (-) True LOC110487099
XM_036945766.1 mRNA upstream 50023 32095531 ~ 32171431 (-) False LOC110487106
XM_021559031.2 mRNA upstream 50023 32095531 ~ 32218170 (-) False LOC110487106
XM_036945763.1 mRNA upstream 50023 32095531 ~ 32218170 (-) False LOC110487106
XM_036945765.1 mRNA upstream 50023 32095531 ~ 32218170 (-) False LOC110487106
TU152378 other downstream 350012 31635320 ~ 31648795 (-) True LOC110486999
TU152311 other downstream 455798 31536047 ~ 31543009 (-) True G132197
TU152092 other downstream 799995 31197073 ~ 31198812 (-) True LOC110486868
TU152144 other downstream 803087 31192466 ~ 31195720 (-) False LOC110486852
TU154326 other upstream 693321 32738829 ~ 32751578 (-) False LOC110514821
TU154330 other upstream 693321 32738829 ~ 32751578 (-) False LOC110514821
TU154412 other upstream 702700 32748208 ~ 32788121 (-) True G134102
TU154709 other upstream 1167156 33212664 ~ 33225102 (-) True LOC110487618
TU155089 other upstream 1819980 33865488 ~ 33865937 (-) True G134668

Expression Profile