RNA id: TU152843



Basic Information


Item Value
RNA id TU152843
length 386
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G132669
representative True

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 32090768 ~ 32091153 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


attatgctctctgcgcttttaacggacctctgagactatcacagtgcaggtgcatttatacggagacttgattacacacaggtggattgtatttatcatcattagtcatttaggtcaacattggatcattcagaaatcctcactgaacttctggagagagtttgctgcactgaaagtaaaggggctgaataattttgcacgcccaatttttccgtttttgaattgttaaaaaagtttgaaatatccaataaatgtcgttccacttcatgattgtgtcccacttgttgttgattcttcacaaaaaactacagttttatatctttatgtttgaagcctgaaatgtggcaaaaggtcgcaaagttcaagggggccgaatactttcgcaa

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU152619 lncRNA upstream 19922 32068827 ~ 32070846 (+) True G132468
TU152602 lncRNA upstream 55847 32034554 ~ 32034921 (+) True G132451
TU152594 lncRNA upstream 108483 31981875 ~ 31982285 (+) True G132443
TU152593 lncRNA upstream 109151 31981369 ~ 31981617 (+) True G132442
TU152592 lncRNA upstream 111078 31979588 ~ 31979690 (+) True G132441
TU152845 lncRNA downstream 506 32091659 ~ 32091914 (+) True G132671
TU153100 lncRNA downstream 215378 32306531 ~ 32306857 (+) True G132912
TU153114 lncRNA downstream 235534 32326687 ~ 32327047 (+) True G132926
TU153094 lncRNA downstream 283495 32374648 ~ 32377402 (+) True G132907
TU153147 lncRNA downstream 311189 32402342 ~ 32402615 (+) True G132956
XM_021558973.2 mRNA upstream 27382 32056519 ~ 32063386 (+) False LOC110487062
XM_036945773.1 mRNA downstream 240938 32332091 ~ 32348968 (+) True LOC110487115
XM_021559060.2 mRNA downstream 265775 32356928 ~ 32365347 (+) False tnfaip8l2b
XM_021559058.2 mRNA downstream 265776 32356929 ~ 32365347 (+) True tnfaip8l2b
XM_021559085.2 mRNA downstream 279649 32370802 ~ 32373873 (+) False scnm1
XM_021559078.2 mRNA downstream 279759 32370912 ~ 32373873 (+) True scnm1
TU152486 other upstream 203196 31857648 ~ 31887572 (+) False G132342
TU152482 other upstream 207695 31857686 ~ 31883073 (+) True G132342
TU151909 other upstream 724446 31360436 ~ 31366322 (+) True eaf1
TU151908 other upstream 727555 31360436 ~ 31363213 (+) False eaf1
TU151868 other upstream 797734 31291470 ~ 31293034 (+) False LOC110534710
TU153719 other downstream 1076285 33167438 ~ 33169378 (+) True G133473
TU153923 other downstream 1405301 33496454 ~ 33497285 (+) True G133663
TU154038 other downstream 1722880 33814033 ~ 33814483 (+) True G133760
TU155162 other downstream 1871264 33962417 ~ 33962658 (+) True G134735
TU156107 other downstream 2596802 34687955 ~ 34690946 (+) True si:dkey-30e9.6

Expression Profile