RNA id: TU154331


Basic Information

Item Value
RNA id TU154331
length 1928
lncRNA type antisense_over
GC content 0.40
exon number 2
gene id G134027
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 32682610 ~ 32684723 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atatatcacATTTGAAAGATTTATTTCTCCCAAAATGCGTTACAAGTATTATTCAATTATCATTTAAATTCATAGCAATTACATTTTCTCCAGTGTAACAAAGTCGGCACCATTTCGTCCCCTGTAGCAAATAATCCGTTTGATTCAGTGGTTTGTCTGTAGTGGTGAAGCTAGTCGTTTAAATTATATCACATTTTAGGTTGTCTAAACATTTATGTACAATACACAACTGTACATAATTGTACAATAGCAACTCTAATCTACCCAATACATTGCATAGTATAGAAATAGAAGAAAAGGAGAATCCGGACACAGAATGAATATTCAATCGTCAAAACTCTACTATCTTCGCATAGTTTTAGTCTGGAATACTTTACATTTTTAATGATGGACTTGCATCTATAAAAGTGATTGTCTATTCATGAAAACATCAGCGATCTACATTAATAACATGCGAGGTACAATTTTCTTTGGTTTTAATATAGAATTTACAACACACAGGCCTACTGCGAATTTGTCTTTCCCTTAGTCAATCGGATGTTTAAAAATGGTTCAAAGTGTAATTCCCTGAACATTGGTGAATGTAACATATCTTAGAAGAGAGGAGAAGCCCCACAAAATCATAAAAACACTCAATTAAAATTAGCATAATCCATTGTTTTTGCATCATCAAAAAGGTTTCACTAGCCCTATTCAAATTCTCAGACCATGATTCAAGTCTACAGCTCTGTCATATACTGTAGCTTCATAGGATCATCTAGGAACATAACATAAGGCAGCTGGTAGGAGGTATATTGCAATGGACTGTCCATGGCCCATGCTGCTTGGAGgatagcatgcttctgtctggTGTAAACACATTATGGGTTACCTTGAGATTGTTTTCTTCTGAGAGTGAAAGGCACTTCTGCTGATGGTCTGGAGTATTTGaacacacactaccaccataTTAGTGAATCAGATATGGTCATTGGCACATTGAAAAATGGCAGACATACACAAGCACCATGTGCTGCCACATCCTGGTTGTACAATCTACTATGTGTGGatctcaagtgtgtgtgtgtgtgtgtgtttatgcgttgAGCTTTTCTGCCTCGTCCGGTGTCCTGACAGTGGTCAACTCCTCATGTGAGCCCTCCTCACCAGGCAGCTGAGAGAGAAATAAATGGAAAGAGAAAAATATGTAGTGGATGATTTATTTAGACCATGTTTTCACCTTATCGAGTCATAAAAAGTATACCTATTTCCTAACTAATTTCAAGACATTCCTAAAtctgtatattttttaaatcaagagAATCGTCAATTACTGATTATGCATGCATTGACCTTGTGAAATGGCACCACCCGGTGTTCTGAGGGTGACTGCTTTGCTTATGATGAAAAGCAGTTATTTGAGTTCAGTAACCAAATGCAAGCATGACACCTTGTGGCCACATATCATATTGCATAACATTGGGCCCAACTGCATGCCATCGTTGGCAATCTTTAACCCTTCATGGGCCTGAATGGCCCTGcactctcacacaaacactaTGTACAAATCAGTGAGTCCTGTGTGTCCATTCATCCATACAAAGTGACTGGGTGTAGTAGCTAAACTTACCTCCCAGTAGATGCCATCCTCAAAACAGATGGTGTCAGGAGGAGCACCATAGATTGGCAGCTTCAGAATAAAAACCGGTGATAAGACCGCCCAGGAGGGCAATGCCGagggtcacagccagggagaTGGCCTGTCGTATGCCCTGGAACGAGGCCTCCACATCACCAGACTGGATGTCAGGGAACACATCAGCCATCCTGCATCACAGAGAGTAGGGAGTGTTGAATTAAACTGTTGTGTGAATGCACGCTTTGACGGGATAGTTGCGCAATAGTGGGAGCTTCACCATAAAACCAGTAGAGGACACACTTTCCCAACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU154286 lncRNA downstream 134903 32547489 ~ 32547707 (-) True G133992
TU154284 lncRNA downstream 136607 32545775 ~ 32546003 (-) True G133990
TU154256 lncRNA downstream 172070 32510155 ~ 32510540 (-) True G133962
TU154254 lncRNA downstream 173237 32509131 ~ 32509373 (-) True G133960
TU153314 lncRNA downstream 223233 32459146 ~ 32459377 (-) True G133118
TU154327 lncRNA upstream 55178 32739901 ~ 32751578 (-) False LOC110514821
TU154328 lncRNA upstream 55178 32739901 ~ 32752004 (-) False LOC110514821
TU154329 lncRNA upstream 55178 32739901 ~ 32756992 (-) True LOC110514821
TU154429 lncRNA upstream 86540 32771263 ~ 32775483 (-) False LOC110487362
TU154430 lncRNA upstream 86540 32771263 ~ 32775516 (-) True LOC110487362
XM_036945880.1 mRNA downstream 42065 32632979 ~ 32640545 (-) True LOC110487305
XM_021559238.2 mRNA downstream 46095 32632979 ~ 32636515 (-) False LOC110487305
XM_021559218.2 mRNA downstream 85458 32592663 ~ 32597152 (-) True rrnad1
XM_021559212.2 mRNA downstream 85459 32592663 ~ 32597151 (-) False rrnad1
XM_036945823.1 mRNA downstream 176753 32498803 ~ 32505857 (-) True ctsk
XR_005036400.1 mRNA upstream 56030 32740753 ~ 32756866 (-) False LOC110514821
XR_002468227.2 mRNA upstream 85687 32770410 ~ 32775521 (-) False LOC110487362
XM_036945996.1 mRNA upstream 171042 32855765 ~ 32868211 (-) False LOC110487370
XM_036946005.1 mRNA upstream 171042 32855765 ~ 32868211 (-) False LOC110487370
XM_036946012.1 mRNA upstream 171042 32855765 ~ 32868211 (-) False LOC110487370
TU152378 other downstream 1033815 31635320 ~ 31648795 (-) True LOC110486999
TU152311 other downstream 1139601 31536047 ~ 31543009 (-) True G132197
TU152092 other downstream 1483798 31197073 ~ 31198812 (-) True LOC110486868
TU152144 other downstream 1486890 31192466 ~ 31195720 (-) False LOC110486852
TU154326 other upstream 54106 32738829 ~ 32751578 (-) False LOC110514821
TU154330 other upstream 54106 32738829 ~ 32751578 (-) False LOC110514821
TU154412 other upstream 63485 32748208 ~ 32788121 (-) True G134102
TU154709 other upstream 527941 33212664 ~ 33225102 (-) True LOC110487618
TU155089 other upstream 1180765 33865488 ~ 33865937 (-) True G134668

Expression Profile