RNA id: TU154482


Basic Information

Item Value
RNA id TU154482
length 2653
lncRNA type antisense_over
GC content 0.46
exon number 3
gene id G134160
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 32848453 ~ 32852110 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAATACCATAAAACATACGCAAAAAGGGGAGGGTAAAGAAGGGACAAATGGATACTTTGGTACAATAACAAACACTTTTTGTAAAAGCAGTATAGAATTTGTAATAACATCAGTGCATACTTTATTTATGAAAATATACACAAATTGTATATCATTctccaaaaacaacaaaaaaAGCAGACTAGCCGAACACAATATATTAGCTATAATTTTTTCTTCAATTTCTATTTTATTTCTGTGTGATGTATATTCTTATTGATATTACATTTCATATGCATTTCCTATAATAGGATTCATTCTTTGTTTGTGTTATGCCCATGCATTGACATCTTTGTGTCTGGTCAGAAATAAATTGTCCTCACTTTACTATCTGTAGACTAAGTTTTGTACATTTGACAAAAAATTGCAGCATTGAACTGGTTATTATATTAAACTTGTTTACCACCTTTCATGATCTCATATGTACTAATATTACTACAGCCGTTTTGTTTTACGTCATAAATCGTGCAATTTTAGTACACCCTTTGAAGAAAAAACTAAAGaaaaaatgaaaacaaaacaaaaatatatttatatataataaaataaaattcaaATAAAACAAGATTCCTAACCTACACAAAACCGCAAAAAATAAAATTGCCTTTTCTATATCATCATTACAATTACCATCGATGGTCACAATAATGATAATATTAACAGTAATAATAGCAATTATCATAGAACAATTATAATAAAAACAGACGATAGAACTGTCACCAGCACAAATTAACACTGGAAAGTGAGATTCTCTAAACATCATTCATTATATATGGGGAATATGGGGGCGCAGGTTAACTATTGTCATGACAATTGTCTTTTCATTTGTGATTACAGTGACCCTTAGTGTTGTTCTGGGATAATGTCAGGGCTTTATACAACACCTCGATTGGCCAGCGTCCATAGTACTAACCAACCCCATCGTCTGCTTCCGCTAGTCACCATTTAGTCTAGGTATGAAACATCGCTTCATGGCATGTGGCCCTATTCAAGACATGGCTACcattattataaaaaaaacatCAGGGTCAATGTTTTGTTCAAAGCTCAGGACACAACAGTCTTACAGTCTAAGGGTGTGTGAATATACCGGCAGGcgtgatcactctctctctctgccatccacCTCTAGACGATCGTCTAGACTCCTGACGAGTCAGTCTGCACAATCCCTACGGCAACAACTACGGTATAAAACGATAAAGAGCCAATGGGAGGTCATTTGAACCTGTTCTGGACGGAGTGCAGAGTATATGCGAGTAcggtgtttgagtgtgtggagcAATGAGGCATTTTGGCAGAAAATTGATAGTGGCAGGGGTCAAATGAGTGTGAGATGGACTTGTCTTAAGTCACTGGTAGGGAGCGGTCGAGTTTACACTACGGTTCAATGAGTGAAATGCTGTAATTACTTCATGTGGCCAGGGAACTCTCCTCTAACAGAAAGCACAGGGAATACTTGTCTGGCTAAtgtgtgaaaatgtgtttgtgtgtgttgaatGAGTTTGACGTGCCTGAGGACATGCAGACATGACTGTCCCTTTCTGGAGGACACCTGACTTTTAAAGAGAGGGGGCATTTTGGGGGCTTGGGGGGAGGAAGGGGTTAAAGTGCGCTCCATCAGAGTACTAACCACTGCTCACTCAAACAGTCCAATCCACTGCTACTTCCTTTTCTGTCCCTCTAGCACCCTCACCTGGCTTTGCAACCTAGTACACTTATGTACACACATAAATAGAAAGACCCGATCCACTGAGAATCAACACATTAGCTTTTAGGGATATCCTGCTGAACATATGTGAACATATATTTCTATATACAATCCCTGTCGTCTATCGTTTTCTCTGCATCGTATGCAGTTCATCACTTACTCTCAAAATCTGCTATCGCTGctgtttaaatatatatttatatgctCTATATGTTTACCCTCAAAAAACGATGTCCCTGCTATACAAAAGCCATACAGAAGGAAACAGAACAAATTGTTTATATACACAGTTCTTCACTTTTTCTCCCAGTTTACATCTCCTATTCAGAGCCTTCTGAAACACAGGCattgtttaacaaaaatatttttgtgtgtgtgtgtgttgtggaGGCATGGGTGTGAGGTCAGCATTTACTGTACATACGGTAAAAGGGTGTGGGATGGTGCatctctccccttcactctctTGTTCTACACATCTATGTGACCCAGGTGTCCAGTCTCATTCTTTTCACGTTGGCCCCCTCCTGCTCCTGCTGCTCCTGAGTGGACGAGGGCCTCAGGAGCCCCATGGCCGAGGAGGCCCCTCCCTGGTGGTGGAAGTCCTGGGCCTGCCCCTGGGCCCCATTGTCCCGGTCACCCTCGTAGGAGCTGCCGTTGCTGCTCAGGCTGCCGACGGGTGAGCGGCCCTGCAGGGTGGACGGCTCCAGGCGCAGGGCCCCTGGGTACTGGCCTGACATAGGGGCCCCTGTGATGGTCACTAGGCCCCCTCCTCCGCCACCCCCAGCTGTTGAGCATGGGGTGCTGCGGTCGCGGTTGGGCGACACGGGCTCCGACTTGATGCTGATGTTGGGGTTGGTGTTAATCGTCAGCATGGTGCCCTGAGGTAAGTGGCCCACCGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU154483 lncRNA downstream 276 32847662 ~ 32848177 (-) True G134161
TU154430 lncRNA downstream 72937 32771263 ~ 32775516 (-) True LOC110487362
TU154429 lncRNA downstream 72970 32771263 ~ 32775483 (-) False LOC110487362
TU154329 lncRNA downstream 91461 32739901 ~ 32756992 (-) True LOC110514821
TU154328 lncRNA downstream 96449 32739901 ~ 32752004 (-) False LOC110514821
TU154506 lncRNA upstream 1344 32853454 ~ 32889349 (-) False LOC110487437
TU154514 lncRNA upstream 32353 32884463 ~ 32889349 (-) False LOC110487437
TU154510 lncRNA upstream 32460 32884570 ~ 32889349 (-) False LOC110487437
TU154511 lncRNA upstream 32460 32884570 ~ 32889349 (-) False LOC110487437
TU154504 lncRNA upstream 32606 32884716 ~ 32889349 (-) True LOC110487437
XR_002468227.2 mRNA downstream 72932 32770410 ~ 32775521 (-) False LOC110487362
XR_005036400.1 mRNA downstream 91587 32740753 ~ 32756866 (-) False LOC110514821
XM_036945880.1 mRNA downstream 207908 32632979 ~ 32640545 (-) True LOC110487305
XM_021559238.2 mRNA downstream 211938 32632979 ~ 32636515 (-) False LOC110487305
XM_021559218.2 mRNA downstream 251301 32592663 ~ 32597152 (-) True rrnad1
XM_036945996.1 mRNA upstream 3655 32855765 ~ 32868211 (-) False LOC110487370
XM_036946005.1 mRNA upstream 3655 32855765 ~ 32868211 (-) False LOC110487370
XM_036946012.1 mRNA upstream 3655 32855765 ~ 32868211 (-) False LOC110487370
XM_036946022.1 mRNA upstream 3655 32855765 ~ 32868211 (-) False LOC110487370
XM_036946031.1 mRNA upstream 3655 32855765 ~ 32868211 (-) False LOC110487370
TU154412 other downstream 60332 32748208 ~ 32788121 (-) True G134102
TU154326 other downstream 96875 32738829 ~ 32751578 (-) False LOC110514821
TU154330 other downstream 96875 32738829 ~ 32751578 (-) False LOC110514821
TU152378 other downstream 1199658 31635320 ~ 31648795 (-) True LOC110486999
TU152311 other downstream 1305444 31536047 ~ 31543009 (-) True G132197
TU154709 other upstream 360554 33212664 ~ 33225102 (-) True LOC110487618
TU155089 other upstream 1013378 33865488 ~ 33865937 (-) True G134668
TU156114 other upstream 1752105 34604215 ~ 34604478 (-) True G135575
TU157060 other upstream 2454257 35306367 ~ 35307729 (-) True G136399
TU157405 other upstream 2822188 35674298 ~ 35675627 (-) False drd2l

Expression Profile