RNA id: TU154608



Basic Information


Item Value
RNA id TU154608
length 226
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G134253
representative True

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 32981056 ~ 32982279 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GTACAAGGTTCACGGTATGTTCACTTATCTGTGTTCAAAGAGCTTGCAGTGTCCAGAACCAGTGTGACATACAGTCTATTACATCACATGAACTCCACGGAgGTGAAGGAACGACATGAAAGCTTGGTGTCCCCACTGATGGTGTGGACATTACATTGAGTCTTTAGTTCCTCATGAAAGTCATGGTTGTTGCTCAACTTGCAGCAGCACATATAGAGTCCAGTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU154528 lncRNA downstream 89140 32891715 ~ 32891916 (-) True G134182
TU154506 lncRNA downstream 91707 32853454 ~ 32889349 (-) False LOC110487437
TU154584 lncRNA upstream 12098 32994377 ~ 33001917 (-) True G134229
TU154581 lncRNA upstream 48970 33031249 ~ 33049288 (-) False G134227
TU154578 lncRNA upstream 51096 33033375 ~ 33049288 (-) False G134227
TU154580 lncRNA upstream 51096 33033375 ~ 33049593 (-) True G134227
TU154586 lncRNA upstream 102656 33084935 ~ 33106505 (-) True G134231
XM_036946113.1 mRNA downstream 12567 32941392 ~ 32968489 (-) True LOC110487461
XM_021559400.2 mRNA downstream 17962 32939047 ~ 32963094 (-) False LOC110487461
XM_021559405.2 mRNA downstream 18383 32941392 ~ 32962673 (-) False LOC110487461
XR_005036431.1 mRNA downstream 91671 32884408 ~ 32889385 (-) False LOC110487437
XM_036946049.1 mRNA downstream 112845 32855765 ~ 32868211 (-) False LOC110487370
XM_036946207.1 mRNA upstream 19850 33002129 ~ 33010958 (-) True LOC110487493
XM_021559423.2 mRNA upstream 30088 33012367 ~ 33018172 (-) True LOC110487486
XM_021559432.2 mRNA upstream 34856 33017135 ~ 33020297 (-) True LOC110487507
XM_021559445.2 mRNA upstream 38542 33020821 ~ 33027137 (-) True LOC110487525
XM_021559487.2 mRNA upstream 74726 33057005 ~ 33074880 (-) True LOC110487583
TU154412 other downstream 192935 32748208 ~ 32788121 (-) True G134102
TU154326 other downstream 229478 32738829 ~ 32751578 (-) False LOC110514821
TU154330 other downstream 229478 32738829 ~ 32751578 (-) False LOC110514821
TU152378 other downstream 1332261 31635320 ~ 31648795 (-) True LOC110486999
TU152311 other downstream 1438047 31536047 ~ 31543009 (-) True G132197
TU154709 other upstream 230385 33212664 ~ 33225102 (-) True LOC110487618
TU155089 other upstream 883209 33865488 ~ 33865937 (-) True G134668
TU156114 other upstream 1621936 34604215 ~ 34604478 (-) True G135575
TU157060 other upstream 2324088 35306367 ~ 35307729 (-) True G136399
TU157405 other upstream 2692019 35674298 ~ 35675627 (-) False drd2l

Expression Profile