RNA id: TU154584


Basic Information

Item Value
RNA id TU154584
length 7541
lncRNA type antisense_over
GC content 0.42
exon number 1
gene id G134229
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 32994377 ~ 33001917 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGCAGATACAATAATAAAATATCAAATTATTCACAAAAACATGTGCTAAGAAATAAACCTGCAATATCACATGCCTCTTGCGGGCATGACACACTGTAACAGTTCAAAGAAGACTTTATTTTATCAAAGTGACGGCCAGCCACATGGCAAACCCTCTCTCACTGATCACAGAGAAACCAGAAACTAAAGCCAGGAGATGCTGACCCAAAACTAATGCACTAAGACCACTATAAGACCGGTATGAAACACTTCTACGGTGCCGGGAGAATCTGAAGAAACACTACCAAAGACTGTCAGACTGCGGTGGCCCCTTCAGAAGAGGACGACGTGAAGGTCATTTCAGTCCCCCTGCTTCAGTCAGTTGTGGCGGAAAATACCGTCCTGACATGTTGAATTGTACGACAAATATTCACTTTTAACTACCTAGTTTTgagattaaataaatacatttttaggtTCATCCATATGTGAAGGAATGACAATCAAGCTTTCCTTCCCTCTTTATAGAACTGGGATGAGAAAATGAAAAGGGTCAAATACTGACCGTGTCACATGGGGACAGAAACGGCCTCTCTTTGCTTCACCTGAAACACTTGTCCTTTTCTGTTTTCTGAAGGGGCGCCAACTATGAAAATCTACAAGGAACAACCAGCCCCAGACCCCTTGTGTTAAAACCAAACACAAAGGATCTGTGGTGTTTATCCAGTCTAGGTGACCATACAAGATACATGCAAACTAGTACGGATatgaatgtgttggtgtgtgtgtgtgtggctggttaCCATAGATCTACTACACAGTGTGCCTATGTGCTAAACTATTGATCACTCAGCTCAGTTCTCAGCCTGTCATGTTTTCAAGAAGAAACTTGAGCCCAATTTTCAGGTAATCATTCATTAAGGCTTTGATGATGTCCTCTCTTGCCTTACCAATCACAAAGGGTCCCAAGTAGTAGACATATGAATGTGTTTATCTGAATGTGTTTAACATGTGCCCCTGTGGGACACCTGAATCACTCGTTCTCAGCATTGCAATCACAACTGAAGCTGTGTTAGCATAAAAAGTTAGAGATTAATAAAAGCAAGTTAAGACTCCAGAGGAAATGTGTAATGGGGCCAGTCAGTATGGGGTTAGTCAAAGGGGAAAATGTAAGCAAGCAGCATAGAGAGAGTGCTGATGCAAGAAATACATGTGTAATTGAGGCACAATATTGATGCTCAGTGACTAAAATACCTCCAAATCCTaaaaatattatattattttctGTCATAATTCCACTGTGAATGCACGGGTGTTCTTTTAAATAGTGCATATCGGAAGTTAAAATATAAGCTATGGGGAACACACATCAGCTTATATTTCATTTACAATGAAATACAGTGTGGAGGTGAGTCCATAACTTTCATAAATAAaacgtattttattttttttaaccgtTAGTAGAAACCAACTTTCCTGTGTTTAGAAATATATTAACTTCTTgtatttttaattaaaaaaacacatttcttgaGGTTACTCATAAATATGTTTTCTTCATTTTAAGATTTTCATAAATAACATCCTGAAACTGACTTAATCCTCGTCTTTCTATGAAATAATAACCCATGTTAGCAAAATAGATTTAAGAAACTGTAATAATATTCATTTTTAAAGTTGCTTTCTATAAATGTATTTGGAAGAACTCTATAGACTGCGGTGAAACCTTCTCACAAATTCTTTCCAgctcactttaaaatgtataaaCCAAAAGGTAAAAAGAGTGCAATGGTAATTTATTTTACATTCAAATGCATTACTTGCTCATCTTGTGATTATGATAGGTCAGAATAATTGCTTAAGTGCGTCAATTTAAAGGATTTCCTATCACTCCTTGAAAGGGGTGCTATTATTGTTATACATAATGCATAAAGAGTTGTACATTTGTTAAAGAGAAGAAAACTGTTCATAGTTTCTACGGTTACTTTAATATATTATAAAGAACACTAACAATTGAAAAAAAAGTTAATGAAATAGACATCCCCCTAAGAGTTCTCACCGCCATCTTTGTTTCTCCACTAAAGGAAGTGGAGTACTTCATATACTGGGTGACTGGGTGCATATATCAAGCTATACCTCATCTTATAAGACAGTCATTATTTGAATTTCTATATCAATTACACCTCAAGGTAAATATATGGAATTAAATATGTCCATCTTAATTTCTTTAAAGCTTTTTATACACCTTGTGGTTATGTTGATGAAATATGTTAATGCCATGGGATCTTAATTTTACTCTTATGTACTGGACTAAACTTCAGCTATCATACTTCGACATGGAGTATAAAGTTAACTAGAAACAATATTAAATTAAAACCGCAGTATTATTTTTGAACTCTAACAAAGGTACTGCAGGGTATTTGTGTAATCTTAACAACTTTCTTATGCATCATTAAACTATTGTTCAGTCTGGGGTCTTTGAGACAAATCTAGCCCTTCAGCTGAAATTCAACATGAATTTGAACAGAATTGTAAACAAAGACAAATTTCTAACCCTTATTTTTCTCATTTATTATGTGTCCCTGCCCCATTCTGAAGAAACATAAACTTCCTAAGACAAGTCTAGCGTTTTCATATTAAGAGCTGTGATGAAACAACTTATAGACATCATTATTCATAAATCTACGTTGGCAATAATACCAATATAAATACAACTTAAGAGGGTGACGCATTAGGACTGGTGTCTTTGGGCAGTGATTGGATAGTTGATCACTGAAGCTACTGTAGCATAAAAAAAGACCAAACTGAAACAGGATGTCTTTATTGAGACAAGCTCCATTTCACAGATATTGACTGAAGCTTGTATGCTGTATGACTTTGGACAAAACTATCACTAGCGGGTTATTAAAAACAAAAGCTGATTATTATTGTATTGACCTCAGACACCTTCATCAATAAATCCAAACTATGATAAGGTCGAAATGTGTTAACATTCGTAGAATTGTAAGCTTACGATTAGCAATATAATTTCTATAGATGTCCTCGAACCTCTTCCAAGGTTTTGTTCTTTGGCTACCTTTTGACCTTTTATTTTAAATCAGCTAAATGCTGGATAATGACTACTTATAACAGATAGCATAAAGAAATAATTAAATTGTGCCATCAAATCAGCTACATATGTTTTGGAACCAAtctaaaaactgaaatatattcTCATGATATGCTTATGGTAACTATAAACGTTTCTCCCTAAACATGAATAAATACAGAGTAATACATGTTAAATAAATGCTACTTTCCCAAGTGATGAAAATGATTGGCTCAATGCATTGGGCATCAGTATACGTTCATATGGAAGAGGTCTTAGATAGATCCTATGGAAATAATCCAACCTTCTGTCTTGCCATTGTGTCTACTTTAGTTTGTGATTTAAGTTATGACTTCCTGCTTTCGACAGACAGGAAATGCCTCAATTGTTCATGTTATGTTCCTGAAAAGCATTGTATGTTTACACTGAAAGCTTACTTATACAATGCAATTGGTTTCTTCCAAATAATAGGTATTGTGATCTCAAAATTCCACAGATACTAAGAGGAGGAACTCTTGAGGTTGCACTGGTGTTGGCACACCCTGTATTTGAGGTATACTTGCAGTCTTATTAATATTCAATGTTAAAAAGACGGGATTAAGCAGTCAAAAATTACTAAAAGCAAGACGTAGGAAAGCAACAAAAACATGCTATTGTGCCTGAAACTGTTACTAATTAATTACATTTCTCATCCTACATTGGCATAAATCCATATGCATTTTTAGAAGATATTAACCAAAAATTGAATAATATTCAAATGAATCAAGTTTGCGTTATGGATGGTGCTGAATTCTATGAATTTACTAAACTGGCTCTTTTGTTTACTGTTGCAGTATTGACATTATTGCTTTTCATCCTAATGTACATAAAACCTGATTCATCCAAAAGGACCTAGGAATATTTTAGAACACGTCTTCACATATTTGAGAGAATGTATTGGTATATGTCAGTGGAAACATCAATACAGCCCTGTATTCATCATTACAGTATGTGGTATTGTGGTATTCTTATCTATATATTTGACTTGATGAAATGCTTAAGTTTATTAGATCCATACATATAAGTAGCCTATCAATATACTTTATGTTTAAGGATGAGgggacattatatatatatatatataaatcaaaGTGATCTTAAAAGTCCATAAACAAACAAATTCAAAATGATATTTTCACCTTGTAAAAATAATCAAAATCCCACTTATATAGCAGGCATTTGACTGGATGTAAattactgatatatatatatacacagatgCGCAGAATCCTTTCTCATAAAGCACAATGCAAATTTCTCCCACAGCCTCTAAAACAGTGAGACTCTCTAAAAAGCCCTCTACATTAAACCAGTGCAAACTCAACCAAGTCATCAgtactgactgaatggatgagaGGTTTCCcataataccactactacaagGAATAACAATAATTATATTATAAAAACATGATAGGGAAACCTTATGTGCATGTCTTTCAAAATCTATGAAGAAATATTCACCATCAGTGGTCGGTTTGGTATTAATTATATGTGTTTTCTCATAATAAGGTGCTTTACTCTATATTTTAATGTAAAGGGTTTAAGAGCCTAATTTCCCAATTCCATTTAACCCCACCCAACCCGGTTGATTCACATTCTTTTCTGACAAATAGTTACGTGAACGTTTTTTTAAGGGGCAATACTATTGAAGGCCTACTGTATGTCACTAAACTTTCATGCCAAAGTGAAAGCAATATTTATCTTTTAATACAAAATATTCaggcttaaaacaaaataaaaaagaaTAGAAAATACTATATTCAGTTAACAGCGTTATACTGCCTTGAAATTGTCATTGACAGTTCAGACCAAACCACTGTGCAGTTCTCCCCATTAATAAATAGTCAATTAATTTCTAAATATGTAATAGAATTTAGATACTCTGAAAGTACAGTTCTATTTCTTCACAGTCCATGGACAACAGGAGTGGTCTGCTGACAATACAATGGGGGAAAGGGGGGCTCTGTTGCTGCCTAGACTAGGGACAACAGTCTATTGTAACTATTCATTATATTTTGATGGACAAAAGTTGAGCAAAAGAGTTCTCCTGAAAAAACAACTTAATAGAGCGATCTGATGCAGTGTTAGTGGGAGACCAGCTGAATCACCAGCATGTCCTTGTTCACCTGCCACCACCAGCAAACATGAGGCAGCAGCCTTCTAACTACCCCTCTCACAAAGACTAGATCTGCAGGTTCTCTTTTCTTTGAGagcagccttctctctctctccaccccaaaAAGCCCCCCTCTTATCCTCCAACGGCTCtaatcccccctccctccctctgaaaTCCCCAGGCTGGGGCTAAGGCAGAGGCAAAGGGTGTGTAATTTGATTCAGCATGAGTGGTGGCTAAATGGGGCGTTTCCTCCGCTTTCCTGTCAATTACAATTGTCTGATTTCATTCTGAAGGCCCAGTGCTAGCCTGCCATTGGCTaagcctgtgtgtctgtggtgagTGGGCAGCTGCAGGATGTCCCATACAGACAGgagataaaggggggggggggggggctctctaTGGAAACTTCGATCTGCACTCGCTCTCTGTCACAAAGGCCTCCATCCAAATTGGGGGGACGATGAACTCCAAGTGATCAGACTCCTCATACTCTTAAATGATATATGTCTGCATGTGTTCATACCCTTATCTTATTGAGAACACATGGAGACATCTAGTTCAGTGGGGCATTTCAAAGAATTGGATCTGTGTGTCAGAATTGTACACTAGGTAATTACTGAATCTACTGACACTGTAGATATCCTTTCTTTCTGCAAAGTCCCCTCACTCTCATTTCAGAGCTGGCAGCCTGTTCAGTTGGTCTCTTTCTTTCATATGCTGCTTTTTTCCTGAGTGTTGGGACAAAGGAGGCCCCTCTCCCCAGTAGGGATAGCTCAGAGCagcagagaaggaaagagggagggggatatGGAAGGAGGGGTCCCATTCGCCCAGCTGCACCCAGACTGGACCTTCTGTGCCTGTGACAGAGGGGTGGGGCGGTCAGCAGCCCACGCCGGGACTCTGTCTCACCCCCCCATTCAGCACCAGGGTCGCCACATGGTCCGCACCTGGACCGGCCAATTTGCCTAATTATCAATGAGTCTCTCCGGGCCGTGTCCGAGCACTCCGGGCCCACGCCACCGCTGGGCCCAGACAATACGCCCCACTCAGGGAGGCAATGCATTCTGGGTCAGCTGCAGTCATTACTACCTTCAACAGCCAACGATCGAACAGTAAGCGGggcggggcggggggggggggggttaagccACTCCCAAAGAAAATAGAAAAAGAGGGGGCTATTAAACACCTGCTTCTGCACAGCTCTGATAATTAGAGGCCTCTGAGCTAAAATACAAAGCTGCTGGACGGGGGTGGCGAGGGAGCTCTGTGGATGGTGGTACTGTATTCTAGGAGCTTTTTGCCCATTTAGGCACACTCTATTACCAATTCAGAGAACagctcagtgttttcctcagCTTCTGTCCACTCTAATGGCTAACGCTCTAACTGCGCAAACCTCAGAGAGATGCCTGTCAAAAGTGGCTCTCGTTTTTGTCCTACATCGTTCAGATAACAGCTAAATTACCACATAAGACAATAAAGTGGGTATAAGTTGGCTTTGAAATTAGTCCATCGGGGAGACGGATCTCCCAAATTAGCCAACTGGACGAATTCCAAGGCTTTTGACCTCACAAATGAAATCAGTGCTTAACACCGGTGAAAGAAACATGCTTTTCAAGTGCCACGAGGAACAGGCATCGCTGAAACTTTTCACCAAACTGCAGTGATATTTCAGCAATACAATGTGTAGCATTCATTCATTCACCTCTTTGTGAAAAAGGAAATCTGTAAGACATATCTGCATAAAGAAAGGCGTTTGTCTGCTGTCCCATATTGTTACCATTCTAACAGGTGTTTAGGGAGGACTACCAGGTATAACAACGAGCTTGTAAAGGGACACAAATGTCAGAAAGATGACAATGATGGAATAGTCTGTCCTTCGATTGGAACAAATTTAGACTTTCAATGACAATATCAAAGCTTGTTCCATTTTTTCGAGCCACATTGAGGGATTTGCCTTTTCATCAGCTACGTCATTTTTCTGGATGATTGACAATCATTAATCTGACTATCCGAAACTAAGACGATTATAAGGTGCAATGAAAGATTAAATCTTTTTCCTTCTGTTTGATTTTGACTTCCCATATCATTCAGGTACAGATAAGATACCAGGGAGTTAAACTGAACCTCAATGATCACCTCCTTCCTTTTCTCCATATAAAACCACTTCATGGTAAAATAAATCTGAATCGTAAAATGTTCACGTTCCTACTACTCCGCCCATACTGTGATTCGTGAATgaaaaacagcagcagtaaaaaaaactgaaaaaatgctAGGTACTATACTTTTCTTATAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU154608 lncRNA downstream 12098 32981056 ~ 32982279 (-) True G134253
TU154609 lncRNA downstream 12489 32981436 ~ 32981888 (-) True G134254
TU154528 lncRNA downstream 102461 32891715 ~ 32891916 (-) True G134182
TU154514 lncRNA downstream 105028 32884463 ~ 32889349 (-) False LOC110487437
TU154581 lncRNA upstream 29332 33031249 ~ 33049288 (-) False G134227
TU154578 lncRNA upstream 31458 33033375 ~ 33049288 (-) False G134227
TU154580 lncRNA upstream 31458 33033375 ~ 33049593 (-) True G134227
TU154586 lncRNA upstream 83018 33084935 ~ 33106505 (-) True G134231
TU154639 lncRNA upstream 142486 33144403 ~ 33173493 (-) True LOC110487587
XM_036946113.1 mRNA downstream 25888 32941392 ~ 32968489 (-) True LOC110487461
XM_021559400.2 mRNA downstream 31283 32939047 ~ 32963094 (-) False LOC110487461
XM_021559405.2 mRNA downstream 31704 32941392 ~ 32962673 (-) False LOC110487461
XR_005036431.1 mRNA downstream 104992 32884408 ~ 32889385 (-) False LOC110487437
XM_036946067.1 mRNA downstream 126166 32855765 ~ 32868211 (-) True LOC110487370
XM_036946207.1 mRNA upstream 212 33002129 ~ 33010958 (-) True LOC110487493
XM_021559423.2 mRNA upstream 10450 33012367 ~ 33018172 (-) True LOC110487486
XM_021559432.2 mRNA upstream 15218 33017135 ~ 33020297 (-) True LOC110487507
XM_021559445.2 mRNA upstream 18904 33020821 ~ 33027137 (-) True LOC110487525
XM_021559487.2 mRNA upstream 55088 33057005 ~ 33074880 (-) True LOC110487583
TU154412 other downstream 206256 32748208 ~ 32788121 (-) True G134102
TU154326 other downstream 242799 32738829 ~ 32751578 (-) False LOC110514821
TU154330 other downstream 242799 32738829 ~ 32751578 (-) False LOC110514821
TU152378 other downstream 1345582 31635320 ~ 31648795 (-) True LOC110486999
TU152311 other downstream 1451368 31536047 ~ 31543009 (-) True G132197
TU154709 other upstream 210747 33212664 ~ 33225102 (-) True LOC110487618
TU155089 other upstream 863571 33865488 ~ 33865937 (-) True G134668
TU156114 other upstream 1602298 34604215 ~ 34604478 (-) True G135575
TU157060 other upstream 2304450 35306367 ~ 35307729 (-) True G136399
TU157405 other upstream 2672381 35674298 ~ 35675627 (-) False drd2l

Expression Profile