RNA id: TCONS_00028257


Basic Information

Item Value
RNA id TCONS_00028257
length 3492
RNA type mRNA
GC content 0.48
exon number 18
gene id XLOC_014210
representative False

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 38167468 ~ 38327733 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GACGTAATACGCAGAACATGAGCTGAGGAGGCGTTCGTTGTACCTTTGTCCAAGCTAAACAAGAAAATCACACAAATGGATCGGGGGTCGAAGCGGCGGCAGGTGAAGCCTTTGGCTGACTCTCTGCTGGATGCTCTGGACTATGACAGCTCAGATGACAGTGATTTTAAAGTTGGAGAATCAtcagGTTCAGAGGGCACTGGCAATGGCAGTGATGAAGAGGGCTCAAAAGAGAGCGCCGCGGGCTCAGAGAGCGACTCTGATGCTGCTGCTGCCTCTGCTGATGAAGAGGGCATAGACGACCTAGAGACCAAAGACTTGAATCAAGAAGATGATGAAGAAGAGAAAGTCAAAGAGTCGTTTTCAGAGGAGACCAGCAGCAAAGAAACAGGAGGAAGCTCTAGGAGTCGCAAAAAGGGAGAAAAATCCTCTGATATGGAACCGAATGGTAGTGCTACGACAGAGGAAAACTCAGCAGAGCCCAAAAAATGGAACCTACGGCGCAACCGACCCATGCTGGACTTCACTACGATGGAAGAGCTGAACGAAATGGATGATTACGACAGCGAGGATGACAATGACTGGAGGCCTacgcagggaaaaaaaaaaggcaaggCATCATCTGGAAAGGAGAAAGAAGGGAGTGGCgaagaggatgatgatgatgatgatggtggtagTGATGAAGAGGACAATGAGGATGataatgacgatgatgatgatgatgatgatgaaggtaaTGATGACGAGAGCAGTAGCAGTGATAGTGAGGAAGAAGGGAAGAAACCAAAAAAGAAAGCAGGGAAAAACACAGGGGCGTTTGACGAGGAGGAAACCAATGACAGCCACAGCACATCTCATGGGAAGGGCAATGAGGACTCTCTGTTGGAGCGGCCTCAGACCTGGAGCTCCCAGCGGATGGAGCACATCCTTATCTGCTGTGTGTGTCTGGGAGACAACAGCGAAGATGCGGATGAGATCATCCAGTGTGACAACTGTGGCGTGACTGTGCATGAAGGATGTTATGGTGTCGATGGTGAGAGTGATTCTATCATGAGCTCGGCCTCAGAGAACTCAACAGAACCGTGGTTCTGTGACGCCTGCAAGAACGGTGTTTCTCCCAGCTGCGAACTCTGTCCCAGTCAGGACGGCATCTTTAAAGAAACTGATGCAGGGAGGTGGGTGCATGTGGTGTGTGCCCTGTATGTTCCAGGGGTCGCATTTGGAGATATTGACAAACTGAGGCCGGAGTGCAGTTTGTGCGAGGACACGCGTTTCGCTCGAACAGGCGTTTGTATCAGCTGTGATGCCGGGATGTGTCGCTCTTTCTTCCATGTCACCTGTGCTCAGAGAGAAGGCCTGCTGTCTGAAGCTGCGGCAGAAGAGGACATTGCAGACCCATTCTTTGCCTACTGCAAGCAGCATGCAGACCGCTTTGACAGGAAATGGAAGAGGAAGAATTACCTGGCCCTGCAGTCCTACTGCAAAGTGTCCTTGCAGGAAAGAGAGAAGCAGCTCACACCTGAAGCTCAGGCTCGTATAACCACGAGGCTCCAGCAGTACAGGGCAAAAGCAGAGCTGTCTCGAAACACTCGGCCGCAGGCATGGGTGCCCCGAGAGAAGCTTCCCCGACCTCTCACCTCCAGTGCTTCAGCCATCCGGAAGCTGATGAGGAAAGCCGAGCTCATGGGAATCAGCACAGACATCTTCCCCGTGGACACATCTGATATCAGTGCAAGCGTGGATGGACGACGCAAACATAAGCAGCCTGCTCTCACTGCAGACTTTGTGAACTACTACCTTGAGCGGAACATGAGGATGATTCAAATCCAGGACAACATCGTGGAGCAGAAGAACCTCAAAGACAAGCTGGAAAGTGAGCAGGAGAAACTGCACATGGAGTATGATAAGCTGTGCGAGTCTCTGGAGGACCTGCAGAATGTCAATGGCCAGCTGAGGACCGAGGGCCAGTCCATATGGAGCATGATGGGGGGGATCGTTGGACAGaagTTGAATGTCCCTGCAGTTCTGAAAGCTCCGAAAGAGAGAAAACCAAGCAAGAAAGAGGGAGGATCGCCAGGGAAGTCATCAAGCCTCCCAGCTATGCTCTACAGCTGTGGGATTTGTAAGAAAAACCAAGACCAGCATCTTTTACTGCTGTGTGACACCTGTAAGCTGCATTACCACCTGGGCTGCCTGGACCCTCCGCTCACACGCATGCCGAAGAAGACCAAAAACAGCTACTGGCAGTGCTCTGAGTGCGACCAGGCCAGCAGTGACGAGGCTGACATCGCCATGGAGACACTACCAGATGGAACCAAAAGGTCCAGGAGGCAGATCAAGGGACCAATCAAATTCATCCCTCAAGAAATGAGCCCGGAGCCCAAGAAGCCTCAAGTAAGAGGGACTAGAACCAGAGGCCAGAAGAGGAAGAGGATGTCCATCTGTGAGGAAGAGAAGATGGAGGAACCACTGCCGAGGGAGCGTAGACAGAGGCAGTCGACTCTGCAGAAAAAGCCCAAAGCCGATGACACGCGGACCGAGTGCACCACCTGCAAGGGCCCGGGCGACAATGAAAACCTAGTGAGGTGTGATGAGTGTCGGCTCTGCTACCACTTCGGCTGTCTGGACCCTCCCCTGAAGAAGTCGCCCAAACAAACAGGTTATGGATGGATCTGTCAGGAATGTGACACCTCTTCATCTAAGgaGGAAGAAGCACAAGAAGTTGAAGAAGAGTCTGTGAATGAGGAAACAGCAGAGCAGGAAATCCCAGACTGAAAAAACTGACATGAAGTAACTGAACTCACTTCCTGCTGAATGGCGGGATTCAAAGTACTAAACAACACACAAGAACTGCCACTGCTTTACCAGACTACAGCTGTAATATTTGATTACCAGTTTCAGGATGAAATGATCACAATTGTGGATGCTGTGATCTCCTCTATATATCTTATTTTCAGATATATTGTACAGCGTCTGCCGTCATGCAGTGCTGGAAACAAGTGGCATGGTTTCTGACACTGTTCTCAAAGATTATTTTTTCATACACTAATTTTGAAATTTGCTATGAGGGTATGAATGTCATATATGTATTTGTGCCCATCCCGTAAACGCCTGTTTGTTAATACGCTTTTTATATTtgccttcatttttttattaacgcCAAAGCACACTATGTGAAAACGAACACTGACAGAAAAGCTGACCGTCATCGTCTCGTGtcgtataaataattcaatacatcTTGATGATGAGAGcaaaatctattttattattttgttttctacaAATCTCACTTTTATAACTACAGTATATTCCAGAACATGCTTTACCATTGACGGTGTTGATGTCCATGTTTGAGGATGTTCTCAGTTTGAGTGTAAAATAGTAAGACAAGTCATCTGCCTCAGCGATTTCAAGATTTGAAGTCTGTATTTAGGTACTTCCAAATAAGAAAAGTGACCTTCATAATAAACATTGTGATttctatta

Function

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0044154 histone H3-K14 acetylation biological_process
GO:0070776 MOZ/MORF histone acetyltransferase complex cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0042393 histone binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0043994 histone acetyltransferase activity (H3-K23 specific) molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-1796 Predicted to enable histone binding activity. Predicted to be involved in histone H3-K14 acetylation and regulation of transcription by RNA polymerase II. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of MOZ/MORF histone acetyltransferase complex. Orthologous to human PHF14 (PHD finger protein 14).

Ensembl:

ensembl_id ENSDART00000087662

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00030010 lncRNA upstream 147911 38017599 ~ 38020095 (+) True XLOC_014209
TCONS_00029728 lncRNA upstream 219720 37937807 ~ 37948286 (+) True XLOC_014208
TCONS_00030009 lncRNA upstream 597330 37569661 ~ 37570676 (+) True XLOC_014204
TCONS_00030008 lncRNA upstream 669327 37494319 ~ 37498679 (+) True XLOC_014202
TCONS_00028242 lncRNA upstream 1540372 36625686 ~ 36627634 (+) True XLOC_014196
TCONS_00030011 lncRNA downstream 50666 38378399 ~ 38384624 (+) True XLOC_014212
TCONS_00030012 lncRNA downstream 127901 38455634 ~ 38467600 (+) False XLOC_014213
TCONS_00030013 lncRNA downstream 145707 38473440 ~ 38475865 (+) True XLOC_014214
TCONS_00030014 lncRNA downstream 405361 38733094 ~ 38777734 (+) False XLOC_014215
TCONS_00030015 lncRNA downstream 405361 38733094 ~ 38778761 (+) True XLOC_014215
TCONS_00028253 mRNA upstream 239965 37848830 ~ 37928041 (+) False XLOC_014207
TCONS_00028252 mRNA upstream 239965 37848830 ~ 37928041 (+) False XLOC_014207
TCONS_00028254 mRNA upstream 240515 37857936 ~ 37927491 (+) False XLOC_014207
TCONS_00028255 mRNA upstream 241581 37925616 ~ 37926425 (+) True XLOC_014207
TCONS_00028249 mRNA upstream 326003 37620342 ~ 37842003 (+) False XLOC_014205
TCONS_00028261 mRNA downstream 94326 38422059 ~ 38467554 (+) False XLOC_014213
TCONS_00028269 mRNA downstream 1698308 40026041 ~ 40039906 (+) False XLOC_014223
TCONS_00028270 mRNA downstream 1699226 40026959 ~ 40028071 (+) False XLOC_014223
TCONS_00028272 mRNA downstream 1741791 40069524 ~ 40113608 (+) False XLOC_014225
TCONS_00028273 mRNA downstream 1741791 40069524 ~ 40113935 (+) False XLOC_014225
TCONS_00028250 other upstream 498232 37669660 ~ 37669774 (+) True XLOC_014206
TCONS_00028243 other upstream 1487799 36680091 ~ 36680207 (+) True XLOC_014197
TCONS_00028240 other upstream 1925098 36242791 ~ 36242908 (+) True XLOC_014194
TCONS_00028239 other upstream 1964811 36203078 ~ 36203195 (+) True XLOC_014193
TCONS_00028237 other upstream 2389049 35778842 ~ 35778957 (+) True XLOC_014189
TCONS_00028260 other downstream 94326 38422059 ~ 38426683 (+) False XLOC_014213
TCONS_00028262 other downstream 136398 38464131 ~ 38466651 (+) True XLOC_014213
TCONS_00028264 other downstream 620839 38948572 ~ 38948686 (+) True XLOC_014217
TCONS_00028266 other downstream 1547098 39874831 ~ 39874947 (+) True XLOC_014221
TCONS_00028268 other downstream 1698195 40025928 ~ 40055391 (+) False XLOC_014223

Expression Profile

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