RNA id: TU153795


Basic Information

Item Value
RNA id TU153795
length 342
lncRNA type intronic
GC content 0.41
exon number 2
gene id G133542
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 33292540 ~ 33294126 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

catcaacaacagtcacccacgaagcatcgttacccattgctccacaaaagccgcggcccttgcagagcaaggggaaccactacttcaaggtctcagagcaagtgacgtcactgattgaaacgctatttagcgcgcaccgctaactaagctagccgtttcacatcggttacatctaTTGAGTGTCGAGTGTGTGTCTAGTGAGTGTCTAGTGAGTGTCTAGTGAGTGTCTAGTGAGTGTCTAGTGTTTGTCTAGTGAGTGTCTAGTGAGTGTCTAATTAGTGTGGCCCCCTTTTCACATTTCCTTCCCTATTTTTCCTTTTTCTCTACTCATCTCAGCCTCTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU153779 lncRNA upstream 28373 33263613 ~ 33264167 (+) True G133527
TU153777 lncRNA upstream 31808 33256492 ~ 33260732 (+) True G133525
TU153769 lncRNA upstream 39234 33253087 ~ 33253306 (+) True G133523
TU153766 lncRNA upstream 47260 33244997 ~ 33245280 (+) True G133520
TU153679 lncRNA upstream 119162 33144374 ~ 33173378 (+) False G133439
TU153820 lncRNA downstream 29017 33323143 ~ 33323421 (+) True G133563
TU153821 lncRNA downstream 30553 33324679 ~ 33324919 (+) True G133564
TU153822 lncRNA downstream 31014 33325140 ~ 33325355 (+) True G133565
TU153823 lncRNA downstream 31903 33326029 ~ 33326349 (+) True G133566
TU153824 lncRNA downstream 32917 33327043 ~ 33329134 (+) True G133567
XR_005036446.1 mRNA upstream 132478 33130317 ~ 33160062 (+) False LOC110487588
XR_005036445.1 mRNA upstream 132478 33138047 ~ 33160062 (+) False LOC110487588
XR_005036447.1 mRNA upstream 132478 33138047 ~ 33160062 (+) False LOC110487588
XM_021559477.2 mRNA upstream 243252 33045832 ~ 33049288 (+) True tmem176l.1
XM_036946173.1 mRNA upstream 246819 33044160 ~ 33045721 (+) True LOC110487536
XM_021559571.2 mRNA downstream 22164 33316290 ~ 33321834 (+) True LOC110487649
XM_021559607.2 mRNA downstream 112683 33406809 ~ 33408519 (+) True LOC110487688
XM_021559622.2 mRNA downstream 140572 33434698 ~ 33460997 (+) False ntrk1
XM_021559629.2 mRNA downstream 140572 33434698 ~ 33460997 (+) True ntrk1
XR_005036461.1 mRNA downstream 237464 33531590 ~ 33540695 (+) True LOC118939517
TU153719 other upstream 123162 33167438 ~ 33169378 (+) True G133473
TU152486 other upstream 1404968 31857648 ~ 31887572 (+) False G132342
TU152482 other upstream 1409467 31857686 ~ 31883073 (+) True G132342
TU151909 other upstream 1926218 31360436 ~ 31366322 (+) True eaf1
TU151908 other upstream 1929327 31360436 ~ 31363213 (+) False eaf1
TU153923 other downstream 202328 33496454 ~ 33497285 (+) True G133663
TU154038 other downstream 519907 33814033 ~ 33814483 (+) True G133760
TU155162 other downstream 668291 33962417 ~ 33962658 (+) True G134735
TU156107 other downstream 1393829 34687955 ~ 34690946 (+) True si:dkey-30e9.6
TU156494 other downstream 1677514 34971640 ~ 34971931 (+) True G135916

Expression Profile