RNA id: TU153804


Basic Information

Item Value
RNA id TU153804
length 2929
lncRNA type antisense_over
GC content 0.33
exon number 1
gene id G133551
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 33359978 ~ 33362906 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATACAACCTCGCtgtcatttgttttgtttttttatacaaACATGTTTGCAGTCTATAAGTGAAATGTtcaagatgttgtctgtaagCCATccaattctttaaaaaaaattgagttGATGATGTAAGCTAATATTATTACATTGAGAggagaaagcacacacacacacacccatttcTTAATTATCCATCATTCCATTAAAGATGACCTCGTTCGTGCCTTATGAGctgcaattttttttttgcaaaaaggtTTCATACagcgtaagcacacacacacagaaatattgTTTTGGATATAGCATAATGGTATTGTGGGGAATGGTTAGTTCCAATTCAAGAAGAACATGCTATCTCAAGTCATGGAGCATCCCTTGAAGGATGACTATTTTGAGCCGCATGTTTGAACTACCTCTCAAAAGACAAACATTACTTAAAGTCCCTCATACCCTTGGCAAATTGTATTTTTGGAAATTAACTCAAATCTTAGTACCCTTAAAAATTGTTCTCTTTTGTATTTTTGGTTAAGTAGGGCATGGAAACTTCCAGGAACAGTGAACACAAATACAAGAGCGCCATCCATTGTGCAAGGCAGTGAATTGCATACAGATATTCTCACACCATTGTGCTTCAAGTGAAAAGACTGAACGGCTGTTTATCAAGTCAGGAAGATTGGTCTTCCTCATGAGTCTACATGGATCATTGGTAATAACACAGCTTGGGTGAGAAAGTGTTAATACATTGGTGATGAGAAAAACAATCAATTCCTAATCTGCAAATCATTGAGAGTAACATGAGACCAAAACGGTATCTAAAAAATGTGATATGTTCTAATCTCCagaattatttatatatatatttttttacatttgatctCTAAATCGCTTTATGAACTACGAACAATGACTCCATGTCTGGATGcaaaatgaaaaaaattaaaaacagggGCTTTACACCGAGTAGGGTACAAAAATTCCAGAAGAGAAACTGCAGCAAAAACAAATAGTGTACACCTGATGCACATtttgtaaaacatacaaacaagaCTGTAATGCCACAAGGACAAGAGACTGAAAAAGGCAACAAGGAAATAGAGTTAAACCACAACACTGGCACCAAAAAGCTGTACCCATGGTAACTGAATCCTTAGAGAAGGGGTTCTAGCCCATGCATCTGCCCTCCCGCAAGTAGAGGTGGCAGTGTCTACAGTTCTGACATGACCTAAGGACAACATAACAGTCAGATACCTTCAAAACGGTAACAAAATGTCTACAGACATTAGGAAAGTGCTTGAATTTGTGCAGAAAGAGGTTAAGCGACAGGGGTCAGTCACTTGTTTGGAATCAACACAATGCCCTCAATAGGACTTGAAGGGGAGTTGGGTTAAACAATCCAACTTGTTTTGAATCGTATCAATGGGGTGTCCATGTCAGGAATTTGGGGTTTTCCATAAGTAGGTTTTCACGAAAAGTTACATGAATATTTAGACCAAAGTAACACAGCCCTATGGACGAGATTCCAGAAAATACCTGTTACCTTTCTCAGCCACAAGAGAAGCAGAGACTAATTGACAGTTACAATGTAAGTGGACAATGTTACAATGGACAGTGTCTTTTTCAACCAAAATGTGAACGTTTACCAGTTTAGCATATACTGATTACCTTGAGGTCGAGCTGAAATTGCAAGGGGAGTTTGTGTTTTGAATGCTGGTTTAGTAGTGTTGGATGACCCTAAATGTACCAGCATATTATTGAAATGCCTCATTTTCATGGATATAAAATGACGAAAACAAGTCAGGAACAGTAAGATTCTAGCAATCTTATTAAATACTATTATAGTCATTCGGAATATCTACCACAGTACTCTGCCATGTTTGTTCTATAATTGATACTGGGAGACATCTAAAAATGGACACAATTTGGACACAATGGTGAATTTAGATTGGATGGTTCCTTGGCCATAAAAGGCATCTTAAGGGTGGATAGGGCTATCTGTTTGCCTGTTTATATTTGAGATGAACTTGTATAGAGGGGGTCTGTTGCATTCTGGAACGTTAGCAGCACCAATGCAGCCCACAGAACAGCAACCACTGTAACATAATACTGTAGTTTCAATTTGCATTACAAGAGAAAAGAAACCCAACTACTCATCAGGAAAGAGCTCCGTTCATTTCCAAGTCATACATGAGCACCCGGTATCAGTAATGCCCTAGGCTAGTCCGTCTGCATACATCTCTAACCCTCTGGTTGAAAAGACTAACAAGACATCGAAGGGCTGATTCGTATGTTAAAATACCATCAATTTACAGGGCCAAATATAGGTCGTCTCCACATATAGAGGGGTGATAATCAAGAAGTTTCAGGTTGTGCTTGTGCagtgttagtttgtgtgtgtgtgtgtgtgtaatgtggatGTAAGAGTGCGTGTATCGCCTGCCGTATACATTCTCTCCACCAGGAGGAGACAGTTGCGAGGTGACAAGGGGACAAAGCGGAGGAGAGCCTGAagttctcactcactcacacacacacacacagcctgcataAGAGCCACAGCAAATGTAAGAGAAGTGCACAGTCCTATTGTCTAACGCCCGCCGCAGCAGCCGCCAGCCACATTCTCTCCAGTCACTGTACCGATCCTGTCCAGGACGTTCTCCACACACAGTGTTGCCTTTAGAGAAGGAAGTGATGCGATGAGAGGGCCAGGCTCTGTATCGTCCTATAGCAGGAAACCTCATCCATCAGTTCCCTTGTGGTTGGTGGCCACAAAGCCAGTTCTGGTCAGTCTGTCCGTTCGTTCAGAACCTGTGGATGGCCGGCTCCGTTTCCCTCCTCTTCAGCTCCTCTCGGTAGCAGCAAGAGCAGTAGTTGCCCGTCTCAGGGTGTCCGTAGTAGTTGCAGCTAGGCGTCCGGCAGCGGCTGGACTGGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU153805 lncRNA upstream 260 33359158 ~ 33359718 (+) True G133552
TU153824 lncRNA upstream 30844 33327043 ~ 33329134 (+) True G133567
TU153823 lncRNA upstream 33629 33326029 ~ 33326349 (+) True G133566
TU153822 lncRNA upstream 34623 33325140 ~ 33325355 (+) True G133565
TU153821 lncRNA upstream 35059 33324679 ~ 33324919 (+) True G133564
TU153907 lncRNA downstream 103824 33466730 ~ 33471416 (+) True G133648
TU153915 lncRNA downstream 119377 33482283 ~ 33482552 (+) True G133655
TU153930 lncRNA downstream 141238 33504144 ~ 33504466 (+) True G133670
TU153936 lncRNA downstream 146639 33509545 ~ 33509807 (+) True G133676
TU153937 lncRNA downstream 149406 33512312 ~ 33512793 (+) True G133677
XM_021559571.2 mRNA upstream 38144 33316290 ~ 33321834 (+) True LOC110487649
XR_005036446.1 mRNA upstream 199916 33130317 ~ 33160062 (+) False LOC110487588
XR_005036445.1 mRNA upstream 199916 33138047 ~ 33160062 (+) False LOC110487588
XR_005036447.1 mRNA upstream 199916 33138047 ~ 33160062 (+) False LOC110487588
XM_021559477.2 mRNA upstream 310690 33045832 ~ 33049288 (+) True tmem176l.1
XM_021559607.2 mRNA downstream 43903 33406809 ~ 33408519 (+) True LOC110487688
XM_021559622.2 mRNA downstream 71792 33434698 ~ 33460997 (+) False ntrk1
XM_021559629.2 mRNA downstream 71792 33434698 ~ 33460997 (+) True ntrk1
XR_005036461.1 mRNA downstream 168684 33531590 ~ 33540695 (+) True LOC118939517
XM_021559709.2 mRNA downstream 305237 33668143 ~ 33694941 (+) False LOC110487797
TU153719 other upstream 190600 33167438 ~ 33169378 (+) True G133473
TU152486 other upstream 1472406 31857648 ~ 31887572 (+) False G132342
TU152482 other upstream 1476905 31857686 ~ 31883073 (+) True G132342
TU151909 other upstream 1993656 31360436 ~ 31366322 (+) True eaf1
TU151908 other upstream 1996765 31360436 ~ 31363213 (+) False eaf1
TU153923 other downstream 133548 33496454 ~ 33497285 (+) True G133663
TU154038 other downstream 451127 33814033 ~ 33814483 (+) True G133760
TU155162 other downstream 599511 33962417 ~ 33962658 (+) True G134735
TU156107 other downstream 1325049 34687955 ~ 34690946 (+) True si:dkey-30e9.6
TU156494 other downstream 1608734 34971640 ~ 34971931 (+) True G135916

Expression Profile