RNA id: TCONS_00028260


Basic Information

Item Value
RNA id TCONS_00028260
length 720
RNA type processed_transcript
GC content 0.45
exon number 3
gene id XLOC_014213
representative False

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 38422059 ~ 38467600 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGGGCTGGCTGTAGGGCTGGGTTACACCTCTCTCATTCCTCCCCTCAAGTCTCTGCCACTGTGTTTTTCTTCCCCGTCCTGGGCACagcacacacgctcacacacacctcTCCTTTTTCCCTGAATCCACCATCCTGGGCTGAGAAGCCAGGAGAGAGGGTGGCAAGGTTTGGAGGAACCGTTGGATTTTGGATAGTGAATCTTCACCATGGCTGAGTTCTTCATCGTCCTCAGGAGTTTGGTTCTGCTGCAGGTCCTCTGCTTGGCCTTATCGCAAGTGACCGGTCCACCCGGAGCTCAAGGCCCCGCTGGTTCCCCTGGTCCTGCTGGAACTCCCGGAGCCGACGGCATTGATggtGAGAAGGGACCCCCTGGACCTCCTGGACCAAGAGTAAGTAGTGATCAGAATtggactttattttttttaactaatccAGTACTGCATTTCTGAAATAAttcaaattagtttattttgttgCTCAAGAATCTTGTTTTGGTACTGGCAGTGTTGAAAACAATGTTCTGCTGCTTAATGTTTTGTGCAAAGCATGGTACATAATGCTTCGTGAGTAGAACAATAAAAAGAGCATCACAAACAGAAAAGTTCAAATATGGTCAAATATGGTAAATATCCTTGCTGATTAAAGGGTAAtgtgttaatttaatttgaataatttatgcaataaaaccaaattcatctaattattttgtatactctca

Function

GO:

id name namespace
GO:0001501 skeletal system development biological_process
GO:0030198 extracellular matrix organization biological_process
GO:0031012 extracellular matrix cellular_component
GO:0005581 collagen trimer cellular_component
GO:0005615 extracellular space cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005201 extracellular matrix structural constituent molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-9786 Predicted to be an extracellular matrix structural constituent. Predicted to be involved in extracellular matrix organization and skeletal system development. Predicted to be part of collagen trimer. Predicted to be active in cytoplasm; extracellular matrix; and extracellular space. Is expressed in several structures, including axis; head; hypochord; nervous system; and pectoral fin. Human ortholog(s) of this gene implicated in Stickler syndrome; multiple epiphyseal dysplasia 2; and osteochondrodysplasia. Orthologous to human COL9A2 (collagen type IX alpha 2 chain).

Ensembl:

ensembl_id ENSDART00000140198

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00030011 lncRNA upstream 37435 38378399 ~ 38384624 (+) True XLOC_014212
TCONS_00030010 lncRNA upstream 401964 38017599 ~ 38020095 (+) True XLOC_014209
TCONS_00029728 lncRNA upstream 473773 37937807 ~ 37948286 (+) True XLOC_014208
TCONS_00030009 lncRNA upstream 851383 37569661 ~ 37570676 (+) True XLOC_014204
TCONS_00030008 lncRNA upstream 923380 37494319 ~ 37498679 (+) True XLOC_014202
TCONS_00030012 lncRNA downstream 28951 38455634 ~ 38467600 (+) False XLOC_014213
TCONS_00030013 lncRNA downstream 46757 38473440 ~ 38475865 (+) True XLOC_014214
TCONS_00030014 lncRNA downstream 306411 38733094 ~ 38777734 (+) False XLOC_014215
TCONS_00030015 lncRNA downstream 306411 38733094 ~ 38778761 (+) True XLOC_014215
TCONS_00028263 lncRNA downstream 520946 38947629 ~ 38959047 (+) True XLOC_014216
TCONS_00028257 mRNA upstream 94326 38168006 ~ 38327733 (+) False XLOC_014210
TCONS_00028258 mRNA upstream 94327 38168014 ~ 38327732 (+) True XLOC_014210
TCONS_00028256 mRNA upstream 164315 38167468 ~ 38257744 (+) False XLOC_014210
TCONS_00028253 mRNA upstream 494018 37848830 ~ 37928041 (+) False XLOC_014207
TCONS_00028252 mRNA upstream 494018 37848830 ~ 37928041 (+) False XLOC_014207
TCONS_00028269 mRNA downstream 1599358 40026041 ~ 40039906 (+) False XLOC_014223
TCONS_00028270 mRNA downstream 1600276 40026959 ~ 40028071 (+) False XLOC_014223
TCONS_00028272 mRNA downstream 1642841 40069524 ~ 40113608 (+) False XLOC_014225
TCONS_00028273 mRNA downstream 1642841 40069524 ~ 40113935 (+) False XLOC_014225
TCONS_00028274 mRNA downstream 1644878 40071561 ~ 40113608 (+) True XLOC_014225
TCONS_00028259 other upstream 165667 38256276 ~ 38256392 (+) True XLOC_014211
TCONS_00028250 other upstream 752285 37669660 ~ 37669774 (+) True XLOC_014206
TCONS_00028243 other upstream 1741852 36680091 ~ 36680207 (+) True XLOC_014197
TCONS_00028240 other upstream 2179151 36242791 ~ 36242908 (+) True XLOC_014194
TCONS_00028239 other upstream 2218864 36203078 ~ 36203195 (+) True XLOC_014193
TCONS_00028262 other downstream 37448 38464131 ~ 38466651 (+) True XLOC_014213
TCONS_00028264 other downstream 521889 38948572 ~ 38948686 (+) True XLOC_014217
TCONS_00028266 other downstream 1448148 39874831 ~ 39874947 (+) True XLOC_014221
TCONS_00028268 other downstream 1599245 40025928 ~ 40055391 (+) False XLOC_014223
TCONS_00028276 other downstream 1689579 40116262 ~ 40126764 (+) False XLOC_014226

Expression Profile

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