RNA id: TU154037


Basic Information

Item Value
RNA id TU154037
length 3865
lncRNA type antisense_over
GC content 0.58
exon number 2
gene id G133759
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 33779236 ~ 33783239 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATGAACAGTAGGGATGTAGACATTTCCATGAAAAGCGAATACAAAGAATACCTTCGTTTTTACAAAGACTGCAGTGCATGACGGTAGCCGATGACCAAAGACACTCAACATTCAAAATGGCAGCGCAGGTGATGAAAACAGTAACATCGGAGATGAAACCTAACAATACAATTCCAGAGGCCACGAGCAAGCTAAAGTGACGACATAAAGAGATTGCCCTCCTACTGTATCATGTTTCTGTCATTTCTAATCTGTCCATTTCACATCATAACACACAGGAAATGAACCCTGGAACACACATTTTGCACAGCATTATCAAGAACAATTGCACTGCCACTGACTGCTGAGCTTTAGACAATTATGGTTACATAAAGACAGGAAATAGTAGATTACCTTTTTTCCATGAGTGGGTTGGAGGCGCTTGTTATAGACAAGGCTGAGGTTAGTTAGTCACAGGATGAGGGATCGTCAAAGCTGAGCAAATGTACAATCACAAATCATCTCTTATCACGAGAGATGAGGGCATGGAGTTCACGACCCCCCAGGTAATACAAACGGATACAGGACCTGGTGTCATTTGACCCAACTCTGTGGAGGTTACATTTGTCCATGTTAATGGTGTCCTACCGGAATGCTGTAGGTGTTAAAATACAATGATGTAAAGGATGAGATCACCTGATAGTTCCTGGCTGTATTTTTCCACACTTTCCTACCATAACTTGATGTACATTGTACTTGAACAGGCAGTATTGTCTTCTTGTAAAATAATATACAAAGGAACAAGGATcacatatataaaaaaaaaaggacTCAAATTGGTATGAACAACAGAACTGATGAACACATAATAAACAATGTATGAATAAGCAAATATGACAGTCCTACGTGATCTTATTTCCGGGCAAAAAGCGATTTGTTTAAATCTAAAGAGAAAAAATGACTTGATAAGAAGCCAATGGGGAAATCTGTCTCAGGTCCAGATAATCTCTACAGTTATCACAGAGGGGTGTTTTAGATTTACATTTCTTACTCATATTCGTCCTAGCCACACAAATATTAAAACTGACAAGTCATTTAATATTCTCTCCCTAGCTGCGACCCACAAAGCtaaataaaatatgttgaatacAACAAGTGCTTATTAAAGCTCGTAATCGCCTAAGGCGAAGTGTCGCTGGAGAAAAACAATACCACAGATAAtatcacaaaataaaaaaaagatccTGACTTCATATCAAATCTGCTATTTGACATGTGGGCAAACTCCTTTCTACTTGAACAAGTAGAAGCTGTGGAAAATCCATCAAATATGGTTCAAACATGACCTCTGACCACTTGGCCATTAGTAATGACCTCACGCCTACAGCATGGACCATATGGTGGAAAAAGTTGGCAATGATGACTCCATAGCTACAAATCCCCAATATGCCTAAGGAGGTAGCTAGCTCCAGTATGAGCGTTAGAAAGCACACTTCAGCTAGCGTTAGCACGACAGAATACACCGAGCCTAACttcaaatcaaaaacagaaactTACCCTTTAAATCAACAACACCTGTTAAAGCCAAATTCCTTACCTCCCGTTCAAATCTAAAACAGAGAACACTGAACTTACCCTCATATTACCTTCAAACACTGATTGTAGCAACCCTCTCAGGCTATAACACTGAAACCACCTTGAAACTTCTGACATTTGTACTTCACGATTTAGGCCCAGTACCACAATAAGGCTATCCTGGTCACAGTTTGGAATTCTATTCTATACAATACATCTGCCATTGAGATGAACATTTCAGAACAGTCGGTTATTCAGAAAAATACCACATCTACAAAACGTCGACAAGCCTATATTCATCTGTAAACATACAGGTTTCTACAGACTTTGCTTAGCAACTGCAGCACAAGAAAAATCAATCCCTATGAAAATCACAATCCAAATGAAGTGCTATTCGTTATTTTTCCGAGGTGAGGTTTTCCACTGTCCATAGCCACATAAGTGACCCCCATTATAAATGTATGACTTGACTGACACCCCACTGACAACGTCCATTAGCCGGTTAATGATTTCTCCACACAGCATCGATGCAGCACCACTTTAAAATGGAAAGCAACATGATACCTTGAAAGACTACGTTATGATTTTGGTATGGTCAGAAATGACACCGTCAAGAGGGGCTTTTAAAAGCTTGAGGTGAAATACTAAAGCAAAGTCAATGGAAAATGGCAATTCGAACACAGCTATTCCAAATTGctcaatcattttttttttttttacttcttctGCGCTCCGTTTCTATCTTGAACACCCAGTCGTGGCACAGCCCATAACCTTGCCCTCATACTTGCCAAGTACTTTTTAATGACCATTGATTGGAAAAGCTATTAAAATCAAACGTGAGTAAACTCTCAAAGTTGACTCAATATTTCCATGTTTGGTTCTCATCACACTTCACttccactcacccacacacattcaATGCAGATTGACTCCATTATCAAACCCTTGACTTGGCTTGGATATTGACACATTCGGAATGCAAGGCGAATGCATCATACCTAGTATAAGAATCAAAGCGATTATCAGCATCATCTGTAGTACTTTACATTATGTGCTAAAAGTAAATCAAGTTCCATTCACCTTGCATTGGATTGCCTGTCGCAACAACAGCCACTACATTTCCCACAGTGCTCCTCATCTAAACCCATGTGACATACAGTAACTGTACCACTATGGTCCCGTACAAATAAGGACAAGCGAGTTTGCCTGGTTAAAGTCTGTGTTTCTTCAGACCCAAGCCCCACTGGTTCCATCAATTTGTCCATTATATCCAGTGACTCTCGTACATTAGTATCCTGCGCATCATTCTCAGTTATGTACGTTCTCTATGTATAGGCATAGGATCAGTCTGAGGCTGTGAGAGAGACTGGTGTGTGTCCATTGTGGAGAGATGCTGCAGAGGATAGAGTGATTGCATGGTAGGAGGATGTTGCAGAAATTTAGGCTGTTCCAGGGGGTAATGGTGACTTTGTGGAGCCCCTATCTCAGGTTATGATGTTTTGTAGGTAAATGATTGATGGGTAGGAAACCCCTTAGGTGTGATGTCTGCTGTGGTCTGAAGAGGTTTACACATCTGACCTTTGACTTTCTTCGGGGCATTGATTGGTCAATTTGATCTGTCCATCATCCTTTACTGCCTTTTGCACCTCCTGCACTAAATGTTCATCCTGGTCAGCTGGGTCTTGTTGCAAGTCAACATTCTCAGTTTCTCCATTGTCTTCCCCTCCATTTGTCTCTTCCTTAGTCTCAACCCCATTTTCCTTCACTTCCATTTcagctcctccccctttctcctctttctGCCCTTGCTCTTtggtctccacctccacctctgacCCCTTGGTAGTTTCGGTTTCATCATCAACTGCCACCCCATTTTCTTTCTCTTCCacgatctccctctctccatctctttcctcctCAGTCTCTGCCCCTGCTTCTTCTCCCTCCTGCACTCTCCCCTCTTTGTCGCTCTTGTCATCTGTTCCTGCAGCTCCAACTCTCTCCTCCCCAGTTTCTACCCCGCTTTCTACCCCTTCCTCAGTTTCTGCCTCAACTTttttctcttcctccacctcacAGGGAGCCTCACCCTCTTTACACACAGTCTCTACCTTCACCTCTTTCACTTTCTCCTTTTTGTTCCCCCTGTTTCCCTTCACGTTCCTCTCCTCTTTGAGCACCTTTTCCCCATCATCAAGAATCTTGGAATCTTCCAGATCTTTCTCTGCTGCCGATTgcttgtttttcttcttcttcttgttttttGACGTGTCTTTAACAGAGTTCTTGTTGGACTTGCTTTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU154066 lncRNA upstream 36664 33740594 ~ 33742572 (+) True G133785
TU154039 lncRNA upstream 64158 33634159 ~ 33715078 (+) True G133761
TU154062 lncRNA upstream 98751 33677384 ~ 33680485 (+) True G133781
TU154003 lncRNA upstream 185246 33593623 ~ 33593990 (+) True G133725
TU153963 lncRNA upstream 218935 33559931 ~ 33560301 (+) True G133699
TU154128 lncRNA downstream 15621 33798860 ~ 33799090 (+) True G133844
TU154131 lncRNA downstream 18715 33801954 ~ 33802157 (+) True G133847
TU154136 lncRNA downstream 24095 33807334 ~ 33807657 (+) True G133852
TU154138 lncRNA downstream 26365 33809604 ~ 33809899 (+) True G133854
TU154139 lncRNA downstream 29400 33812639 ~ 33812922 (+) True G133855
XM_021559802.2 mRNA upstream 20444 33749647 ~ 33758792 (+) False LOC110487876
XM_021559795.2 mRNA upstream 20444 33750069 ~ 33758792 (+) False LOC110487876
XM_021559809.2 mRNA upstream 20444 33750069 ~ 33758792 (+) True LOC110487876
XM_021559784.2 mRNA upstream 32795 33733444 ~ 33746441 (+) True tap1
XM_021559774.2 mRNA upstream 52998 33719833 ~ 33726238 (+) True LOC110487856
XM_021559836.2 mRNA downstream 90666 33873905 ~ 33880108 (+) True LOC110487915
XM_021559846.2 mRNA downstream 104600 33887839 ~ 33945400 (+) False LOC110487926
XR_005036479.1 mRNA downstream 104600 33887839 ~ 33945400 (+) False LOC110487926
XM_021559854.2 mRNA downstream 104622 33887861 ~ 33945400 (+) True LOC110487926
XM_036946589.1 mRNA downstream 381447 34164686 ~ 34169250 (+) False LOC118939520
TU153923 other upstream 281951 33496454 ~ 33497285 (+) True G133663
TU153719 other upstream 609858 33167438 ~ 33169378 (+) True G133473
TU152486 other upstream 1891664 31857648 ~ 31887572 (+) False G132342
TU152482 other upstream 1896163 31857686 ~ 31883073 (+) True G132342
TU151909 other upstream 2412914 31360436 ~ 31366322 (+) True eaf1
TU154038 other downstream 30794 33814033 ~ 33814483 (+) True G133760
TU155162 other downstream 179178 33962417 ~ 33962658 (+) True G134735
TU156107 other downstream 904716 34687955 ~ 34690946 (+) True si:dkey-30e9.6
TU156494 other downstream 1188401 34971640 ~ 34971931 (+) True G135916
TU156498 other downstream 1189210 34972449 ~ 34972801 (+) True G135920

Expression Profile