RNA id: TU155089



Basic Information


Item Value
RNA id TU155089
length 450
RNA type TUCP
GC content 0.47
exon number 1
gene id G134668
representative True

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 33865488 ~ 33865937 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ctgcctgtgtataatggtttctagcttccctgaacagctgcatatcacgggggctgtttgatgctaatgcagaacgccataggatgtttttgtgttggttaagggcagtcaggtctggggagaaccaagggctatatctgttcctggttctaaatttcttgaatggggcatgtttatttaagatggttaggaaggcatttaaaaaaaatatccaggcatcctctactgacgggatgaggtcaatatccttccaggataccccgaccaggtcgattagaaaggcctgctcgctgaagtgtttcagggagcgttttacagtgatgagaggaggtcgtttgaccgctgacccattacggatgcaggcaatgaggcagtgatcgctgagatcttggttgaagacagcagaggtgtatttagaggggaagttggttaggataatatctatgaggg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU155056 lncRNA downstream 55693 33809574 ~ 33809795 (-) True G134635
TU155040 lncRNA downstream 76284 33788826 ~ 33789204 (-) True G134619
TU154982 lncRNA downstream 106709 33725521 ~ 33758779 (-) True G134562
TU154977 lncRNA downstream 118803 33742952 ~ 33746685 (-) True G134557
TU154895 lncRNA downstream 325665 33523035 ~ 33539823 (-) False syngap1b
TU155090 lncRNA upstream 371 33866308 ~ 33866913 (-) True G134669
TU155102 lncRNA upstream 13368 33879305 ~ 33880423 (-) True G134680
TU155166 lncRNA upstream 99570 33965507 ~ 33965740 (-) True G134739
TU155197 lncRNA upstream 123303 33989240 ~ 33989446 (-) True G134770
TU155238 lncRNA upstream 151593 34017530 ~ 34017837 (-) True G134811
XM_021559825.2 mRNA downstream 14723 33779193 ~ 33850765 (-) True LOC110487899
XM_021559819.2 mRNA downstream 14724 33779193 ~ 33850764 (-) False LOC110487899
XM_021559764.2 mRNA downstream 133044 33726338 ~ 33732444 (-) True LOC110487833
XM_021559751.2 mRNA downstream 133045 33725770 ~ 33732443 (-) False LOC110487833
XM_021559757.2 mRNA downstream 133046 33726338 ~ 33732442 (-) False LOC110487833
XM_036946534.1 mRNA upstream 208618 34074555 ~ 34124205 (-) False LOC110487942
XM_036946523.1 mRNA upstream 208618 34074555 ~ 34134234 (-) False LOC110487942
XM_036946539.1 mRNA upstream 208618 34074555 ~ 34134234 (-) False LOC110487942
XM_036946543.1 mRNA upstream 208618 34074555 ~ 34134234 (-) False LOC110487942
XM_036946551.1 mRNA upstream 208618 34074555 ~ 34134234 (-) False LOC110487942
TU154709 other downstream 640386 33212664 ~ 33225102 (-) True LOC110487618
TU154412 other downstream 1077367 32748208 ~ 32788121 (-) True G134102
TU154326 other downstream 1113910 32738829 ~ 32751578 (-) False LOC110514821
TU154330 other downstream 1113910 32738829 ~ 32751578 (-) False LOC110514821
TU152378 other downstream 2216693 31635320 ~ 31648795 (-) True LOC110486999
TU156114 other upstream 738278 34604215 ~ 34604478 (-) True G135575
TU157060 other upstream 1440430 35306367 ~ 35307729 (-) True G136399
TU157405 other upstream 1808361 35674298 ~ 35675627 (-) False drd2l
TU157404 other upstream 1808494 35674431 ~ 35675705 (-) False drd2l
TU158240 other upstream 2504067 36370004 ~ 36370328 (-) True G137479

Expression Profile