RNA id: TU156439



Basic Information


Item Value
RNA id TU156439
length 221
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G135865
representative True

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 34901560 ~ 34901780 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GTGCAGGATGTATGAAGctggaacagaaagagagggtgTGCAGATTTAAAGAAGATGAGTGGGGGAGTTTTACAGACTCAAGAAGGAATTGAAAACTCCCTGTGGCGTGAAAGTTGCAGCTATTAGTCATCCAATAGGGAACAATAGGGATGTTGTCAAtctgggagagaggacagaacaACTTCACTCAGGAAGAAGCGTGGGATGGGACAGTATAGGAT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU156435 lncRNA upstream 6061 34895279 ~ 34895499 (+) True G135861
TU156236 lncRNA upstream 144380 34756631 ~ 34757180 (+) True G135685
TU156221 lncRNA upstream 163066 34738282 ~ 34738494 (+) True G135671
TU155892 lncRNA upstream 346195 34554573 ~ 34555365 (+) True G135380
TU155852 lncRNA upstream 389847 34510480 ~ 34511713 (+) True G135341
TU156447 lncRNA downstream 11946 34913726 ~ 34914891 (+) True G135873
TU156491 lncRNA downstream 50359 34952139 ~ 34952511 (+) True G135913
TU156492 lncRNA downstream 50737 34952517 ~ 34952855 (+) True G135914
TU156485 lncRNA downstream 51299 34953079 ~ 34953420 (+) True G135907
TU156497 lncRNA downstream 71828 34973608 ~ 34973832 (+) True G135919
XM_021560237.2 mRNA upstream 206356 34692610 ~ 34695204 (+) False arl4aa
XM_021560219.2 mRNA upstream 206356 34693092 ~ 34695204 (+) False arl4aa
XM_021560228.2 mRNA upstream 206356 34693290 ~ 34695204 (+) True arl4aa
XM_036946727.1 mRNA upstream 209274 34688109 ~ 34692286 (+) False si:dkey-30e9.6
XM_036946724.1 mRNA upstream 211807 34688109 ~ 34689753 (+) False si:dkey-30e9.6
XM_021560410.2 mRNA downstream 59591 34961371 ~ 34964552 (+) True LOC110488257
XR_002468376.2 mRNA downstream 83168 34984948 ~ 34997219 (+) False LOC110488281
XR_002468377.2 mRNA downstream 83168 34984948 ~ 34997219 (+) False LOC110488281
XR_002468378.2 mRNA downstream 83168 34984948 ~ 34997219 (+) False LOC110488281
XR_002468380.2 mRNA downstream 83168 34984948 ~ 34997219 (+) False LOC110488281
TU156107 other upstream 210614 34687955 ~ 34690946 (+) True si:dkey-30e9.6
TU155162 other upstream 938902 33962417 ~ 33962658 (+) True G134735
TU154038 other upstream 1087077 33814033 ~ 33814483 (+) True G133760
TU153923 other upstream 1404275 33496454 ~ 33497285 (+) True G133663
TU153719 other upstream 1732182 33167438 ~ 33169378 (+) True G133473
TU156494 other downstream 69860 34971640 ~ 34971931 (+) True G135916
TU156498 other downstream 70669 34972449 ~ 34972801 (+) True G135920
TU156464 other downstream 83192 34984972 ~ 34996796 (+) False LOC110488281
TU156467 other downstream 96616 34998396 ~ 35000555 (+) True LOC110488281
TU156680 other downstream 249980 35151760 ~ 35153650 (+) True lypc

Expression Profile