RNA id: TU156605


Basic Information

Item Value
RNA id TU156605
length 2427
lncRNA type antisense_over
GC content 0.42
exon number 2
gene id G136020
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 35036470 ~ 35038923 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTCAGTGAAAAACAATGGGTTTATTTTACTATGATTATCCATATATTTGAATACATATAATCTGAAATATATCAACATTTAAAATTGTAAATATAGTGTATACAAATATCTTAAAATCCAGTTGTATagacagagtgtacaaaacattaagaatacctgctttttccatgacatagactgaacaagtgaatccaggtgaaagctatgatcccttattgatgtcacctgttcaatccacttcaatcagtgtagatgaaggggaggagaaggatttttttttaagcctggagaccattgaaacatggattgtgtatgtgaaccgttcagagggtgaatgggcaagacaaagtgcctttgaacagggtgtggtagtaggtgccaggcacccCAGCTTGAGACCGTGCCCCGACGACTTGAGGCCgtcctgagggcaaaaggggctgCAACctcaatagtaggaaggtgttcctaatgttttgtacactcagtgtatattcataCATGTGCAAGAGTATATTTCTCTAAATAATCTTCACATACATATATAACAATATTACCCAATGTCGTCCATGTACAGTTAATAAATAGGGACTATTTCATCCAATAACTTCCTATGGAGAGGTTGTATATCTCACTTTCCTATACCCTGAGCTACAGTATGTCATTAGAACGTCAACAAAATCCTGACCTGAAACCTTGTTACGTCTTGAACTATAGTGCAACATGAGATAATGCTATTTGGAAAAGTATCGTCACTTGCGTAACTTGCCAATAAAGCTGTGTTATATCATTGCTTCATACATTTGGACGAATTGCTAACGAATGAGATTGTACATATATATATTAACTGTCGTAGACGCATGTCAGAATCCTTTACATATACTCTTCGTCATCACATTCACAAATGTGGTTGTACAAAGCTAAAATTGGAGGGACAATTCGGAAAGAAACGTCAAATATAAGACCGGGTGACAGGTGACAGGCATGTACCCTCACATTTACATTTATATACAGATTGTCACTAAAATCTGTTTTCCCCTAAAGACAAAGAAAATCaaaaaggcttggaagactgatgcaTAATACATATGGCGTTTAAAATCTGTAGGAGGTTGAGCTACCTTTGAATATCTCTGATGTGTCCAAGAAAGTTCAAATCGCCGGAACATATCAAGTCATAACAAGTCCAATTGAAAACGTTCAAAAAGATGATCCATAGAAAATGTATTAGGTTACATATCACATTACACTCGTTTCTTATCAAATGGGTTTCATCTATTCAAGAGCATATAACAGCAAACATGTGATTGAAGATACAAAGCTGTACTTGAATATGTATACAGCAAAACATCCACAAATCTCTTGCTATTGTCCCAAAATGTGGGTGCACATTCCAAAACCCTCTACTGCATATGGCTATAATGTTGGCAATTCACTGTCAGTTAGGATGACTTTACACTGAGTTTAGATGGCGTCTTGATATTGAATCCACAGGGAAACTGTGCTGTTTTTTCCACTGTAATTGCATTTGAACAGTTTCCACCCCTTTagcccccccacaaaaaaaaaacgattgaACTAAATAGATATAGGGCACAACACTGAATCCAtgacataacatatcatacattatGCAATAACAATATTAATCAATTACCAGGTGCTTCGCTATTTCAACAAACAGAAGACAAATAGGCAGAGACGGGAGTCAAAAAggagcaaacacacacagtacacaaagTCCTCCCGGAGATCCTGGATACATCTGCACAACAGAACGAGAAAACAAACAAAGGGAAGTGAAAAGGGGAGATCTGTCCATTTTCTTGTCTCCACAAGTAGACTGAGGGTTACTCTGGGATGTGCTCGTCTCTTATTCAATAACTCATATTACTAGTCATAAGTGCTTCAGGTCCCCACAGTGAGATTGACTGTGAGAAAGACTGGTGTTACCCCGGGTGACTCGCCTCACAGCAGCCTGTAGTGAATGGAAAAGTCCTCTGCCGTCGTGTGCCTCCACTCACTCTGTCAATGTCAGTAGCTTGTGCTCTTTTTCCATAACAAGTGAAAGTCACAGTGCCTCCATGTGTGTTCGTTCCTCCATGTGCTCTGCGCTCTTCCagccctccccccacccccttcaCTTGTAGAGCAGGGGGATCTGGCTGTTGTGACAGTGGTTGCGACTTATCTTGCTGTCCGCCTGGTACAGGTTGGAGGAGTTGGAGAAGGAGGGGGGTAAGGAGGAGTGATTGTCCGACGCGGGGTTGGGGTAACCGGGTGGAGGCAGGAGAGACTTGGGGTCTGGCTGGGAAGAGGGCGGGGACGGGTTGCTGTGGTTCTGATTGGTGCCGGATGAGGGCCGTCGTCGGTTGCGCAGGGCCTGTCTCTCAACCAGCTGGTTGCGGAGCTCCGATACCCTCTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156604 lncRNA upstream 1209 35035019 ~ 35035261 (+) True G136019
TU156603 lncRNA upstream 1699 35033905 ~ 35034771 (+) True G136018
TU156600 lncRNA upstream 8938 35027186 ~ 35027532 (+) True G136015
TU156497 lncRNA upstream 62638 34973608 ~ 34973832 (+) True G135919
TU156485 lncRNA upstream 83050 34953079 ~ 34953420 (+) True G135907
TU156606 lncRNA downstream 3389 35042312 ~ 35048954 (+) True G136021
TU156638 lncRNA downstream 48356 35087279 ~ 35089332 (+) True G136044
TU156649 lncRNA downstream 62920 35101843 ~ 35102075 (+) True G136055
TU156663 lncRNA downstream 83927 35122850 ~ 35123075 (+) False LOC110533739
TU156665 lncRNA downstream 84934 35123857 ~ 35124065 (+) True LOC110533739
NM_001124357.1 mRNA upstream 11462 35023007 ~ 35025008 (+) True tnf-alpha
NM_001124425.1 mRNA upstream 26764 35004580 ~ 35009706 (+) True lt-b2
XR_002468381.2 mRNA upstream 36485 34984948 ~ 34999985 (+) False LOC110488281
XR_005036520.1 mRNA upstream 36485 34984948 ~ 34999985 (+) False LOC110488281
XR_005036519.1 mRNA upstream 39251 34984948 ~ 34997219 (+) False LOC110488281
LOC110533739 mRNA downstream 83880 35122803 ~ 35127514 (+) False LOC110533739
XM_021560547.2 mRNA downstream 89047 35127970 ~ 35141476 (+) False LOC110488331
XM_021560537.2 mRNA downstream 89091 35128014 ~ 35141476 (+) False LOC110488331
XM_021560555.2 mRNA downstream 89257 35128180 ~ 35141476 (+) False LOC110488331
XM_021560571.2 mRNA downstream 90291 35129214 ~ 35141476 (+) True LOC110488331
TU156467 other upstream 35915 34998396 ~ 35000555 (+) True LOC110488281
TU156464 other upstream 39674 34984972 ~ 34996796 (+) False LOC110488281
TU156498 other upstream 63669 34972449 ~ 34972801 (+) True G135920
TU156494 other upstream 64539 34971640 ~ 34971931 (+) True G135916
TU156107 other upstream 345524 34687955 ~ 34690946 (+) True si:dkey-30e9.6
TU156680 other downstream 112837 35151760 ~ 35153650 (+) True lypc
TU156686 other downstream 141756 35180679 ~ 35183996 (+) False LOC110488391
TU156687 other downstream 141756 35180679 ~ 35183996 (+) True LOC110488391
TU157479 other downstream 746768 35785691 ~ 35787470 (+) True LOC110488639
TU157485 other downstream 816226 35855149 ~ 35856400 (+) False LOC100653444

Expression Profile