RNA id: TU156638


Basic Information

Item Value
RNA id TU156638
length 2033
lncRNA type antisense_over
GC content 0.40
exon number 2
gene id G136044
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 35087279 ~ 35089332 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGTGACATCACACTACTGCACCACTTTATGAATAAATAAAGAGGAAGACATCAAATGGACAATGATTGAAGGGTTGAAAGCATAGAAATACAATtgctagtcattctatttctatggctgagagaatgaggggaagagatggataTATTGGAAGTATGTAAAGAGCGGGACAAAGACGGAGGTCGATTCAGGAATACAGCAGATAACCAGCATTAAATAAGATCCCTTTAAAATAACTATACAAAGACATTCAAATAAATCTGTACATTTCATTATTTTCTCTATAAATGGTGTAATTATACACAAACTTACATTTAATCCATTGACTACATTTCTTGTACcctccactttgccaaagcagtACACAGACAACatatcaCAAGTCCAGGCAAAACAGAGTTAGGATGACTCATAGATGATTCACATTTAAAATTAAACATATGGTCAAAAGCATGTCCTTCATGGGAGTATTTCTCAACTGTTGACCACAGTTTAATACTGTATACACAGATCTGAACAGTGTGTTGTTGTAGCCAGTGCTATGCTGTCTTTGTTTGCGTAGTACTGTGTCAAGGACAAGGCACATTTCAGTTTACGACCTAGGAGGCTCTACAGAAACAATATATAgggaaattattttatttaaaaaaatacaaaaacaaaggatcTTAAAATTATTAAAATTTAAACAAGTAAAACATAATATTATGCCAGCGTAATATTTTATGAACAATTTATAAAAATGTTTAGTTAGACCTGAATACTAATACACATATAATAAAAGTCAAAATAAATAGTCTGGAGTGCTTTCTGTCATCAAGCAAGTTGTCAGAATGGAGTTTGTAACTCTCTAGTTTGTTTTGGGGTCCTATTGACTAGAACCCTGAAACCAGGTTTTCAGAATAAGTACAAAAAAACTAATTGTTCTTGCACTTTTTACAATACGCGTTTACATTTATGTACTAAAATAAACCATATCTACAGTATGAAACAAAAATGGAGCGTACATATGAATTCACACTTACTTTTTTGTTGCAAAAGAACATTGATTTTATCTTACACCAGAAATTCAGTTACTACCGTTTAGATTGAATAGGGCTCCCAGTTGTCATGTTTATTGTAGTCTCTTACTTTGATTGTTCCTTCATGCACTAGGACATATGTGTCTAAGGTTTTGTTATTGCCAGAATAAAGGAAGTAAAGCAGCTAATCTCAGAGGCATGTACAGTCTAGGAGTTTCAGTAGTGTTGTAATATGATGCAAAACCTGTCAGGCTCCTTATATTTTCAGGTCTTGTCAACGTACCTGTGCTTCGCTACTACTGAATATCATACCCCCCTGTTTAAAATGTGTTACTTTAGATACAGCAGATCTGATTTtcctcatattttatattttggtCTTTTGCCAGGATAATGAGCTAGCTCGACCGGACACTTATTTTTAATTGATAAACTATAAGCGATAAGGACAGCTCTCACAAGCTGAAGCTCCTGTGATGTTGCTTCAGGAACTGCTGTTGGCGCTGCATTTGCCCATCCCttctttcccttcctccccctctctcattctctccatcctccccagGCAGACTGCCCACATCGCTAAATTCTCCGAGGTGTTCGATGGAATCGCATTTCTCCAGGTCAGAAGCGATGGTCTGCAGACTGAAGACGGAAAGGGAATCtgaccctgctctctctccatgcGTCTCGGgcctctctcccccgctctccctgTATTTCTCCACCAGCCCAATTTTCTTATCCGCCACGCCGCTTCTGTTCACCCTATCGGTCTCCATTGCCCCTCCTTCACATGCCCCGCCCtcgacaccacacaccacactgtccGACTCCGCCCCAATAGGGGGACTCCGCCCACCACAGGCCATGGTTTGTCCACCATCGGTTTGGTTCCGCCCCCGCTGAGCATGGATGGCCTCGCTGATTTGCTCCAGGTTGTGCAAGGCGACAGAGTAGCGGTTTTTCACTTTGGTCACATGCTCCTCCAGCTGCATCACTTTGGTTTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156606 lncRNA upstream 38325 35042312 ~ 35048954 (+) True G136021
TU156605 lncRNA upstream 48356 35036470 ~ 35038923 (+) True G136020
TU156604 lncRNA upstream 52018 35035019 ~ 35035261 (+) True G136019
TU156603 lncRNA upstream 52508 35033905 ~ 35034771 (+) True G136018
TU156600 lncRNA upstream 59747 35027186 ~ 35027532 (+) True G136015
TU156649 lncRNA downstream 12511 35101843 ~ 35102075 (+) True G136055
TU156663 lncRNA downstream 33518 35122850 ~ 35123075 (+) False LOC110533739
TU156665 lncRNA downstream 34525 35123857 ~ 35124065 (+) True LOC110533739
TU156677 lncRNA downstream 54403 35143735 ~ 35145446 (+) True G136079
TU156684 lncRNA downstream 68500 35157832 ~ 35158037 (+) True G136086
NM_001124357.1 mRNA upstream 62271 35023007 ~ 35025008 (+) True tnf-alpha
NM_001124425.1 mRNA upstream 77573 35004580 ~ 35009706 (+) True lt-b2
XR_002468381.2 mRNA upstream 87294 34984948 ~ 34999985 (+) False LOC110488281
XR_005036520.1 mRNA upstream 87294 34984948 ~ 34999985 (+) False LOC110488281
XR_005036519.1 mRNA upstream 90060 34984948 ~ 34997219 (+) False LOC110488281
LOC110533739 mRNA downstream 33471 35122803 ~ 35127514 (+) False LOC110533739
XM_021560547.2 mRNA downstream 38638 35127970 ~ 35141476 (+) False LOC110488331
XM_021560537.2 mRNA downstream 38682 35128014 ~ 35141476 (+) False LOC110488331
XM_021560555.2 mRNA downstream 38848 35128180 ~ 35141476 (+) False LOC110488331
XM_021560571.2 mRNA downstream 39882 35129214 ~ 35141476 (+) True LOC110488331
TU156467 other upstream 86724 34998396 ~ 35000555 (+) True LOC110488281
TU156464 other upstream 90483 34984972 ~ 34996796 (+) False LOC110488281
TU156498 other upstream 114478 34972449 ~ 34972801 (+) True G135920
TU156494 other upstream 115348 34971640 ~ 34971931 (+) True G135916
TU156107 other upstream 396333 34687955 ~ 34690946 (+) True si:dkey-30e9.6
TU156680 other downstream 62428 35151760 ~ 35153650 (+) True lypc
TU156686 other downstream 91347 35180679 ~ 35183996 (+) False LOC110488391
TU156687 other downstream 91347 35180679 ~ 35183996 (+) True LOC110488391
TU157479 other downstream 696359 35785691 ~ 35787470 (+) True LOC110488639
TU157485 other downstream 765817 35855149 ~ 35856400 (+) False LOC100653444

Expression Profile