RNA id: TU156757


Basic Information

Item Value
RNA id TU156757
length 268
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G136144
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 35289377 ~ 35289644 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctgatattggcacaagatggagggagtGTTGGAACATAACAAACGAATTACAGTTAACAAAAACGGACCCTTAATCCAGGATAAAGTAATGTACAGAATTTATTatacatgacaacaacaaaaaatccctAAATCTATAGCACAATGGCAGAGTCATGatttaagtgtaaaactaactgCGACTTGTGGGGGTGCTATAAAGTCCAAAAGTTAAGGGCGAAattagaaagttggctgtcagaaggtTTACAATATAAATGTACTTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156706 lncRNA upstream 50327 35233194 ~ 35239050 (+) False LOC110534843
TU156701 lncRNA upstream 50436 35233787 ~ 35238941 (+) False LOC110534843
TU156704 lncRNA upstream 50436 35233787 ~ 35238941 (+) True LOC110534843
TU156696 lncRNA upstream 88891 35199342 ~ 35200486 (+) True G136097
TU156684 lncRNA upstream 131340 35157832 ~ 35158037 (+) True G136086
TU156824 lncRNA downstream 101424 35391068 ~ 35391284 (+) True G136199
TU156826 lncRNA downstream 103664 35393308 ~ 35393788 (+) True G136201
TU156827 lncRNA downstream 105100 35394744 ~ 35395183 (+) True G136202
TU156779 lncRNA downstream 114064 35403708 ~ 35405944 (+) True LOC110488522
TU156842 lncRNA downstream 152086 35441730 ~ 35466376 (+) False LOC118939544
XM_036946933.1 mRNA upstream 50132 35205181 ~ 35239245 (+) False LOC110534843
XM_036946942.1 mRNA upstream 50132 35205184 ~ 35239245 (+) False LOC110534843
XM_036946949.1 mRNA upstream 50132 35205799 ~ 35239245 (+) False LOC110534843
XM_036946947.1 mRNA upstream 50132 35214910 ~ 35239245 (+) False LOC110534843
XM_021560639.2 mRNA upstream 93524 35187825 ~ 35195853 (+) True dnajc28
XM_021560689.2 mRNA downstream 4455 35294099 ~ 35307452 (+) True LOC110488465
XM_021560697.2 mRNA downstream 35632 35325276 ~ 35334443 (+) True LOC110488474
XM_036947031.1 mRNA downstream 106691 35396335 ~ 35405972 (+) False LOC110488522
XM_036947025.1 mRNA downstream 106957 35396601 ~ 35405972 (+) False LOC110488522
XM_021560752.2 mRNA downstream 107025 35396669 ~ 35405972 (+) False LOC110488522
TU156686 other upstream 105381 35180679 ~ 35183996 (+) False LOC110488391
TU156687 other upstream 105381 35180679 ~ 35183996 (+) True LOC110488391
TU156680 other upstream 135727 35151760 ~ 35153650 (+) True lypc
TU156467 other upstream 288822 34998396 ~ 35000555 (+) True LOC110488281
TU156464 other upstream 292581 34984972 ~ 34996796 (+) False LOC110488281
TU157479 other downstream 496047 35785691 ~ 35787470 (+) True LOC110488639
TU157485 other downstream 565505 35855149 ~ 35856400 (+) False LOC100653444
TU157486 other downstream 565584 35855228 ~ 35856400 (+) False LOC100653444
TU157722 other downstream 693188 35982832 ~ 36037741 (+) True G136994
TU157787 other downstream 809967 36099611 ~ 36100277 (+) True G137058

Expression Profile